Description Usage Arguments Value Examples
Cluster tissues
1 2 | top_genes_cluster_tissues(gen, n_top = 100, method = "mfa", q = 2,
g = 2)
|
gen |
An EMMIXgene object produced by select_genes(). |
n_top |
number of top genes (as ranked by likelihood) to be selected |
method |
Method for separating tissue classes. Can be either 't' for a univariate mixture of t-distributions on gene cluster means, or 'mfa' for a mixture of factor analysers. |
q |
number of factors if using mfa |
g |
number of components if using mfa |
An EMMIXgene object containing:
stat |
A matrix containing clustering (0 or 1) for each sample (columns) by each group(rows). |
top_gene |
The row numbers of the top genes. |
fit |
The fit object used to determine the clustering. |
1 2 | alon_sel <- select_genes(alon_data[seq_len(100), ])
alon_top_10<-top_genes_cluster_tissues(alon_sel, 10, method='mfa', q=3, g=2)
|
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