EMbC: Expectation-Maximization Binary Clustering

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Unsupervised, multivariate, binary clustering for meaningful annotation of data, taking into account the uncertainty in the data. A specific constructor for trajectory movement analysis yields behavioural annotation of trajectories based on estimated local measures of velocity and turning angle, eventually with solar position covariate as a daytime indicator, ("Expectation-Maximization Binary Clustering for Behavioural Annotation").

Author
Joan Garriga, John R.B. Palmer, Aitana Oltra, Frederic Bartumeus
Date of publication
2016-11-10 08:18:34
Maintainer
Joan Garriga <jgarriga@ceab.csic.es>
License
GPL-3 | file LICENSE
Version
2.0.0
URLs

View on CRAN

Man pages

binClst-class
Binary Clustering Class
binClst_Instance
binClst Instance definition
binClstPath-class
Binary Clustering Path Class
binClstPath_Instance
binClstPath Instance definition
binClstStck-class
Binary Clustering Move Class # #
bkml
Generate a burstwise .kml file of a binClstPath_instance.
bmap
Generate an HTML burstwise webmap of a binClstPath_instance.
chkp
Check labeling profile
cnfm
Confusion matrix
embc
General pourpose multivariate binary Clustering (EMbC)
EMbC_pckg
Expectation-Maximization binary Clustering package.
expth
Synthetic path used in the examples
lblp
Labeling profile plot
lkhp
Likelihood profile plots
pkml
Generate a pointwise .kml file of a binClstPath_instance
pmap
Generate an HTML pointwise webmap of a binClstPath_instance.
rlbl
Manual relabelling of clusters.
sct3
Dynamic 3D-scatterplot
sctr
Clustering 2D-scatterplot
setc
Sets binClst color palette .
slct
Select a single path from a 'binClstStck' instance.
smth
Posterior smoothing of single local labels.
stbc
speed/turn bivariate binary Clustering.
stts
Clustering statistics.
varp
Variables' profile plots
view
Path fast view
x2d
Synthetic 2D object used in the examples

Files in this package

EMbC
EMbC/inst
EMbC/inst/doc
EMbC/inst/doc/EMbC_qckref.pdf
EMbC/inst/doc/EMbC_qckref.Rmd
EMbC/inst/doc/EMbC_qckref.R
EMbC/src
EMbC/src/Makevars
EMbC/src/mvbc.cpp
EMbC/src/Makevars.win
EMbC/src/RcppExports.cpp
EMbC/NAMESPACE
EMbC/NEWS.md
EMbC/data
EMbC/data/x2d.RData
EMbC/data/expth.RData
EMbC/R
EMbC/R/classes.R
EMbC/R/pckg.R
EMbC/R/kmlDoc.R
EMbC/R/methods.R
EMbC/R/mvbc.R
EMbC/R/bursting.R
EMbC/R/functions.R
EMbC/R/RcppExports.R
EMbC/R/webMap.R
EMbC/R/smoothing.R
EMbC/R/constructors.R
EMbC/vignettes
EMbC/vignettes/imgs
EMbC/vignettes/imgs/pkml0.png
EMbC/vignettes/imgs/pkml01.png
EMbC/vignettes/EMbC_qckref.Rmd
EMbC/vignettes/biblio.bib
EMbC/MD5
EMbC/build
EMbC/build/vignette.rds
EMbC/DESCRIPTION
EMbC/man
EMbC/man/lblp.Rd
EMbC/man/stts.Rd
EMbC/man/chkp.Rd
EMbC/man/setc.Rd
EMbC/man/slct.Rd
EMbC/man/embc.Rd
EMbC/man/x2d.Rd
EMbC/man/bkml.Rd
EMbC/man/binClstPath-class.Rd
EMbC/man/binClstStck-class.Rd
EMbC/man/lkhp.Rd
EMbC/man/cnfm.Rd
EMbC/man/pmap.Rd
EMbC/man/stbc.Rd
EMbC/man/varp.Rd
EMbC/man/bmap.Rd
EMbC/man/pkml.Rd
EMbC/man/binClst-class.Rd
EMbC/man/binClst_Instance.Rd
EMbC/man/expth.Rd
EMbC/man/EMbC_pckg.Rd
EMbC/man/binClstPath_Instance.Rd
EMbC/man/sct3.Rd
EMbC/man/sctr.Rd
EMbC/man/rlbl.Rd
EMbC/man/smth.Rd
EMbC/man/view.Rd
EMbC/LICENSE