EMbC: Expectation-Maximization Binary Clustering
Version 2.0.0

Unsupervised, multivariate, binary clustering for meaningful annotation of data, taking into account the uncertainty in the data. A specific constructor for trajectory movement analysis yields behavioural annotation of trajectories based on estimated local measures of velocity and turning angle, eventually with solar position covariate as a daytime indicator, ("Expectation-Maximization Binary Clustering for Behavioural Annotation").

Browse man pages Browse package API and functions Browse package files

AuthorJoan Garriga, John R.B. Palmer, Aitana Oltra, Frederic Bartumeus
Date of publication2016-11-10 08:18:34
MaintainerJoan Garriga <jgarriga@ceab.csic.es>
LicenseGPL-3 | file LICENSE
Version2.0.0
URL <doi:10.1371/journal.pone.0151984>
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("EMbC")

Man pages

binClst-class: Binary Clustering Class
binClst_Instance: binClst Instance definition
binClstPath-class: Binary Clustering Path Class
binClstPath_Instance: binClstPath Instance definition
binClstStck-class: Binary Clustering Move Class # #
bkml: Generate a burstwise .kml file of a binClstPath_instance.
bmap: Generate an HTML burstwise webmap of a binClstPath_instance.
chkp: Check labeling profile
cnfm: Confusion matrix
embc: General pourpose multivariate binary Clustering (EMbC)
EMbC_pckg: Expectation-Maximization binary Clustering package.
expth: Synthetic path used in the examples
lblp: Labeling profile plot
lkhp: Likelihood profile plots
pkml: Generate a pointwise .kml file of a binClstPath_instance
pmap: Generate an HTML pointwise webmap of a binClstPath_instance.
rlbl: Manual relabelling of clusters.
sct3: Dynamic 3D-scatterplot
sctr: Clustering 2D-scatterplot
setc: Sets binClst color palette .
slct: Select a single path from a 'binClstStck' instance.
smth: Posterior smoothing of single local labels.
stbc: speed/turn bivariate binary Clustering.
stts: Clustering statistics.
varp: Variables' profile plots
view: Path fast view
x2d: Synthetic 2D object used in the examples

Functions

EMbC Man page
EMbC-package Man page
bCPStd Source code
bgrC Source code
binClst-class Man page
binClstPath-class Man page
binClstPath_instance Man page
binClstStck-class Man page
binClst_instance Man page
bkml Man page
bkml,binClstPath-method Man page
bmap Man page
bmap,binClstPath-method Man page
bound2R_cpp Source code
burstIt Source code
bwWebMapPath Source code
bwWebMapPoints Source code
chckCycl Source code
check.move Source code
checkConstructorCall Source code
chkp Man page
chkp,binClst-method Man page
cnfm Man page
cnfm,binClst,binClst-method Man page
cnfm,binClst,numeric-method Man page
cnfm,binClstPath,missing-method Man page
cnfm,binClstStck,missing-method Man page
dens2wght_cpp Source code
earthR Source code
embc Man page Source code
expth Man page
findMidPoint Source code
formatMeters Source code
formatSecs Source code
frmTht Source code
getClusters_cpp Source code
getColors Source code
getLkh_cpp Source code
getPropLims Source code
getRmatrix_cpp Source code
getSolarPos Source code
getSpeed Source code
getSubPth Source code
getTheta Source code
getTurns Source code
getkLbls Source code
gssTheta Source code
jitter Source code
kmlBurstPthB Source code
kmlBurstTracks Source code
kmlEnd Source code
kmlHead Source code
kmlPthB Source code
kmlPthH Source code
kmlPthM Source code
lblp Man page
lblp,binClst,binClst-method Man page
lblp,binClst,missing-method Man page
lblp,binClst,numeric-method Man page
lblp,binClstStck,missing-method Man page
lkhp Man page
lkhp,binClst-method Man page
lkhp,list-method Man page
loxDest Source code
loxDst Source code
loxTht Source code
maxminScale Source code
mrkBody Source code
mrkHead Source code
mrkTail Source code
newDel Source code
parSet Source code
pkml Man page
pkml,binClstPath-method Man page
pmap Man page
pmap,binClstPath-method Man page
postSmth Source code
priorSmth Source code
pwWebMapPath Source code
pwWebMapPoints Source code
rlbl Man page
rlbl,binClst-method Man page
sct3 Man page
sct3,binClst-method Man page
sctr Man page
sctr,binClst-method Man page
sctr,binClstStck-method Man page
sctr2D Source code
sctr3D Source code
setMarkerSizes Source code
setc Man page Source code
slct Man page Source code
smth Man page
smth,binClst-method Man page
spanTime Source code
splitPrc_cpp Source code
stCertainty Source code
stbc Man page Source code
stbc.path Source code
stbc.stack Source code
stepInfo Source code
stts Man page
stts,binClst-method Man page
stts,binClstStck-method Man page
varp Man page
varp,binClstPath-method Man page
varp,matrix-method Man page
view Man page
view,binClstPath-method Man page
view,data.frame-method Man page
webMapEnd Source code
webMapHead Source code
x2d Man page

Files

inst
inst/doc
inst/doc/EMbC_qckref.pdf
inst/doc/EMbC_qckref.Rmd
inst/doc/EMbC_qckref.R
src
src/Makevars
src/mvbc.cpp
src/Makevars.win
src/RcppExports.cpp
NAMESPACE
NEWS.md
data
data/x2d.RData
data/expth.RData
R
R/classes.R
R/pckg.R
R/kmlDoc.R
R/methods.R
R/mvbc.R
R/bursting.R
R/functions.R
R/RcppExports.R
R/webMap.R
R/smoothing.R
R/constructors.R
vignettes
vignettes/imgs
vignettes/imgs/pkml0.png
vignettes/imgs/pkml01.png
vignettes/EMbC_qckref.Rmd
vignettes/biblio.bib
MD5
build
build/vignette.rds
DESCRIPTION
man
man/lblp.Rd
man/stts.Rd
man/chkp.Rd
man/setc.Rd
man/slct.Rd
man/embc.Rd
man/x2d.Rd
man/bkml.Rd
man/binClstPath-class.Rd
man/binClstStck-class.Rd
man/lkhp.Rd
man/cnfm.Rd
man/pmap.Rd
man/stbc.Rd
man/varp.Rd
man/bmap.Rd
man/pkml.Rd
man/binClst-class.Rd
man/binClst_Instance.Rd
man/expth.Rd
man/EMbC_pckg.Rd
man/binClstPath_Instance.Rd
man/sct3.Rd
man/sctr.Rd
man/rlbl.Rd
man/smth.Rd
man/view.Rd
LICENSE
EMbC documentation built on May 20, 2017, 5:43 a.m.