clustergram.plot.matlines: Plot function for clustergram

In EcotoneFinder: Characterising and Locating Ecotones and Communities

Description

Plot function for clustergram

Usage

clustergram.plot.matlines(X, Y, k.range, x.range, y.range, COL,
  add.center.points, centers.points)

Arguments

X	vector of the k number of cluster for the x-axis
Y	corrdinates of the cluster centers on the y-axis
k.range	x axis breaks.
x.range	x axis range.
y.range	y axis range (PCA scores).
COL	colour palette.
add.center.points	Should the centers be plotted as points. (see clustergram)
centers.points	matrix of centers position.

Details

Internal clustergram plot function. The input arguments are computed by the clustergram function directly.

Value

A clustergram plot.

Examples

####### Example data:
   SyntheticTrial <- SyntheticData(SpeciesNum = 100,
                                   CommunityNum = 3, SpCo = NULL,
                                   Length = 500,
                                   Parameters = list(a=c(40, 80, 50),
                                                     b=c(100,250,400),
                                                     c=rep(0.03,3)),
                                   dev.c = .015, pal = c("#008585", "#FBF2C4", "#C7522B"))

   ######## 6 clustergram plots
   for (i in 1:6) clustergram(as.matrix(SyntheticTrial[,2:ncol(SyntheticTrial)]),
                              clustering.function = clustergram.kmeans,
                              clustergram.plot = clustergram.plot.matlines,
                              k.range = 2:10, line.width = .2)

EcotoneFinder documentation built on Feb. 17, 2021, 1:07 a.m.