EpiBayes: Implements Hierarchical Bayesian Models for Epidemiological Applications

Hierarchical Bayesian models for use in disease freedom and disease prevalence studies, designed with epidemiological applications in mind. The models themselves are in the spirit of those presented in Branscum et al. (2006) (see package documentation for full reference). The helper functions and methods were designed to make implementation and processing of the complex model output relatively simple in application.

Author
Matthew Branan, Marta Remmenga, Lori Gustafson, Jennifer Hoeting
Date of publication
2015-06-24 11:15:19
Maintainer
Matthew Branan <matthew.branan@gmail.com>
License
GPL (>= 2)
Version
0.1.2

View on CRAN

Man pages

eb
eb Generic
ebhistorical
ebhistorical Generic
ebsamplesize
ebsamplesize Generic
ebsummary
ebsummary Generic
EpiBayesHistorical
Historical Aggregation for Disease Model
EpiBayes_ns
Disease Model without Storage
EpiBayes_s
Disease Model with Storage
EpiBayesSampleSize
Sample Size Search for EpiBayes Models
plot.eb
Plot Method for EpiBayes Output
plot.ebhistorical
Plot Method for EpiBayesHistorical Output
plot.ebhistoricalsummary
Plot Method for Summary of EpiBayes Historical Object
print.eb
Print Method for EpiBayes Object
print.ebhistorical
Print Method for EpiBayes Historical Object
print.ebhistoricalsummary
Print Method for EpiBayes Historical Object
print.ebsamplesize
Print Method for EpiBayes Sample Size Object
print.ebsummary
Print Method for EpiBayes Historical Object
summary.eb
Summary Method for EpiBayes Object
summary.ebhistorical
Summary Method for EpiBayes Historical Object
utils_mumhproposaldist
Proposal Distribution for MH Step for 'mu'
utils_mumhtargetdist
Target Distribution for MH Step for 'mu'
utils_newalphbet
Computes Beta Parameters given a Mean and Variance

Files in this package

EpiBayes
EpiBayes/inst
EpiBayes/inst/doc
EpiBayes/inst/doc/EpiBayes2Level.Rnw
EpiBayes/inst/doc/EpiBayesIntroduction.pdf
EpiBayes/inst/doc/EpiBayesIntroduction.Rnw
EpiBayes/inst/doc/EpiBayes2Level.pdf
EpiBayes/inst/doc/EpiBayes3Level.pdf
EpiBayes/inst/doc/EpiBayes2Level.R
EpiBayes/inst/doc/EpiBayes3Level.Rnw
EpiBayes/inst/doc/EpiBayes3Level.R
EpiBayes/inst/doc/EpiBayesIntroduction.R
EpiBayes/NAMESPACE
EpiBayes/NEWS
EpiBayes/R
EpiBayes/R/utils_mumhproposaldist.R
EpiBayes/R/utils_newalphbet.R
EpiBayes/R/eb.R
EpiBayes/R/print.eb.R
EpiBayes/R/summary.ebhistorical.R
EpiBayes/R/plot.ebhistorical.R
EpiBayes/R/plot.eb.R
EpiBayes/R/print.ebsamplesize.R
EpiBayes/R/summary.eb.R
EpiBayes/R/print.ebhistoricalsummary.R
EpiBayes/R/plot.ebhistoricalsummary.R
EpiBayes/R/EpiBayes_s.R
EpiBayes/R/ebsummary.R
EpiBayes/R/print.ebsummary.R
EpiBayes/R/EpiBayes_ns.R
EpiBayes/R/utils_mumhtargetdist.R
EpiBayes/R/ebsamplesize.R
EpiBayes/R/EpiBayesHistorical.R
EpiBayes/R/ebhistorical.R
EpiBayes/R/EpiBayesSampleSize.R
EpiBayes/R/print.ebhistorical.R
EpiBayes/vignettes
EpiBayes/vignettes/EpiBayes2Level.Rnw
EpiBayes/vignettes/EpiBayesIntroduction.Rnw
EpiBayes/vignettes/EpiBayes3Level.Rnw
EpiBayes/MD5
EpiBayes/build
EpiBayes/build/vignette.rds
EpiBayes/DESCRIPTION
EpiBayes/man
EpiBayes/man/ebhistorical.Rd
EpiBayes/man/ebsummary.Rd
EpiBayes/man/print.ebhistoricalsummary.Rd
EpiBayes/man/EpiBayes_s.Rd
EpiBayes/man/summary.eb.Rd
EpiBayes/man/print.ebsamplesize.Rd
EpiBayes/man/plot.eb.Rd
EpiBayes/man/utils_mumhtargetdist.Rd
EpiBayes/man/plot.ebhistorical.Rd
EpiBayes/man/print.ebhistorical.Rd
EpiBayes/man/ebsamplesize.Rd
EpiBayes/man/EpiBayesHistorical.Rd
EpiBayes/man/EpiBayes_ns.Rd
EpiBayes/man/summary.ebhistorical.Rd
EpiBayes/man/eb.Rd
EpiBayes/man/print.eb.Rd
EpiBayes/man/print.ebsummary.Rd
EpiBayes/man/EpiBayesSampleSize.Rd
EpiBayes/man/utils_mumhproposaldist.Rd
EpiBayes/man/plot.ebhistoricalsummary.Rd
EpiBayes/man/utils_newalphbet.Rd