EpiEstim: EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves.
Version 1.1-2

This package provides tools to quantify transmissibility throughout an epidemic from the analysis of time series of incidence.

Browse man pages Browse package API and functions Browse package files

AuthorAnne Cori <a.cori@imperial.ac.uk>
Date of publication2013-03-08 18:07:31
MaintainerAnne Cori <a.cori@imperial.ac.uk>
LicenseGPL (>= 2)
Version1.1-2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("EpiEstim")

Man pages

DiscrSI: Discretized Generation Time Distribution Assuming A Shifted...
EpiEstim-package: The EpiEstim package
EstimateR: Estimation of the instantaneous reproduction number
Flu1918: Data on the 1918 H1N1 influenza pandemic in Baltimore
Flu2009: Data on the 2009 H1N1 influenza pandemic in a school in...
Measles1861: Data on the 1861 measles epidemic in Hagelloch, Germany
OverallInfectivity: Overall Infectivity Due To Previously Infected Individuals
SARS2003: Data on the 2003 SARS epidemic in Hong Kong
Smallpox1972: Data on the 1972 smallpox epidemic in Kosovo
WT: Estimation of the case reproduction number using the Wallinga...

Functions

DiscrSI Man page Source code
EpiEstim Man page
EpiEstim-package Man page
EstimateR Man page Source code
Flu1918 Man page
Flu2009 Man page
Measles1861 Man page
OverallInfectivity Man page Source code
SARS2003 Man page
Smallpox1972 Man page
WT Man page Source code

Files

MD5
sync.x64.ffs_db
R
R/EstimationR.R
NAMESPACE
man
man/WT.Rd
man/Smallpox1972.Rd
man/SARS2003.Rd
man/OverallInfectivity.Rd
man/Measles1861.Rd
man/Flu2009.Rd
man/Flu1918.Rd
man/EstimateR.Rd
man/EpiEstim-package.Rd
man/DiscrSI.Rd
DESCRIPTION
data
data/Smallpox1972.RData
data/SARS2003.RData
data/Measles1861.RData
data/Flu2009.RData
data/Flu1918.RData
EpiEstim documentation built on May 19, 2017, 6:29 p.m.