EpiEstim: EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves.

This package provides tools to quantify transmissibility throughout an epidemic from the analysis of time series of incidence.

Author
Anne Cori <a.cori@imperial.ac.uk>
Date of publication
2013-03-08 18:07:31
Maintainer
Anne Cori <a.cori@imperial.ac.uk>
License
GPL (>= 2)
Version
1.1-2

View on CRAN

Man pages

DiscrSI
Discretized Generation Time Distribution Assuming A Shifted...
EpiEstim-package
The EpiEstim package
EstimateR
Estimation of the instantaneous reproduction number
Flu1918
Data on the 1918 H1N1 influenza pandemic in Baltimore
Flu2009
Data on the 2009 H1N1 influenza pandemic in a school in...
Measles1861
Data on the 1861 measles epidemic in Hagelloch, Germany
OverallInfectivity
Overall Infectivity Due To Previously Infected Individuals
SARS2003
Data on the 2003 SARS epidemic in Hong Kong
Smallpox1972
Data on the 1972 smallpox epidemic in Kosovo
WT
Estimation of the case reproduction number using the Wallinga...

Files in this package

EpiEstim
EpiEstim/MD5
EpiEstim/sync.x64.ffs_db
EpiEstim/R
EpiEstim/R/EstimationR.R
EpiEstim/NAMESPACE
EpiEstim/man
EpiEstim/man/WT.Rd
EpiEstim/man/Smallpox1972.Rd
EpiEstim/man/SARS2003.Rd
EpiEstim/man/OverallInfectivity.Rd
EpiEstim/man/Measles1861.Rd
EpiEstim/man/Flu2009.Rd
EpiEstim/man/Flu1918.Rd
EpiEstim/man/EstimateR.Rd
EpiEstim/man/EpiEstim-package.Rd
EpiEstim/man/DiscrSI.Rd
EpiEstim/DESCRIPTION
EpiEstim/data
EpiEstim/data/Smallpox1972.RData
EpiEstim/data/SARS2003.RData
EpiEstim/data/Measles1861.RData
EpiEstim/data/Flu2009.RData
EpiEstim/data/Flu1918.RData