add_vertices: Fast Version of network::add.vertices for Edgelist-formatted...

In EpiModel: Mathematical Modeling of Infectious Disease Dynamics

Fast Version of network::add.vertices for Edgelist-formatted Network

Description

This function performs a simple operation of updating the edgelist attribute n that tracks the total network size implicit in an edgelist representation of the network.

Usage

add_vertices(el, nv)

Arguments

el	A two-column matrix of current edges (edgelist) with an attribute variable n containing the total current network size.
nv	A integer equal to the number of nodes to add to the network size at the given time step.

Details

This function is used in EpiModel modules to add vertices (nodes) to the edgelist object to account for entries into the population (e.g., births and in-migration).

Value

Returns the matrix of current edges, el, with the population size attribute updated based on the number of new vertices specified in nv.

Examples

## Not run: 
library("EpiModel")
nw <- network_initialize(100)
formation <- ~edges
target.stats <- 50
coef.diss <- dissolution_coefs(dissolution = ~offset(edges), duration = 20)
x <- netest(nw, formation, target.stats, coef.diss, verbose = FALSE)

param <- param.net(inf.prob = 0.3)
init <- init.net(i.num = 10)
control <- control.net(type = "SI", nsteps = 100, nsims = 5,
                       tergmLite = TRUE)

# networkLite representation after initialization
dat <- crosscheck.net(x, param, init, control)
dat <- initialize.net(x, param, init, control)

# Check current network size
attributes(dat$el[[1]])$n

# Add 10 vertices
dat$el[[1]] <- add_vertices(dat$el[[1]], 10)

# Check new network size
attributes(dat$el[[1]])$n

## End(Not run)

EpiModel documentation built on Oct. 12, 2024, 1:06 a.m.