Man pages for EpiModel
Mathematical Modeling of Infectious Disease Dynamics Model Data for Deterministic Compartmental Models Model Data for Stochastic Models transmat infection tree into a network object
as.phylo.transmatConvert transmat infection tree into a phylo object
bipvalsVertex Attributes for Bipartite Network
births.icmBirths: icm Module
births.netBirths: netsim Module
brewer_rampRColorBrewer Color Ramp for EpiModel Plots
calc_eqlCalculate Equilibrium for Infection Prevalence
check_bip_degdistCheck Degree Distribution for Bipartite Target Statistics
color_teaCreates a TEA Variable for Infection Status for 'ndtv'...
comp_plotPlot Compartment Diagram for Epidemic Models
control.dcmControl Settings for Deterministic Compartmental Models
control.icmControl Settings for Stochastic Individual Contact Models
control.netControl Settings for Stochastic Network Models
copy_toall_attrCopies Vertex Attributes in Formation Formula to attr List
crosscheck.dcmCross Checking of Inputs for Deterministic Compartmental...
crosscheck.icmCross Checking of Inputs for Stochastic Individual Contact...
crosscheck.netCross Checking of Inputs for Stochastic Network Models
dcmDeterministic Compartmental Models
dcm.modsDeterministic Compartmental Model Functions
deaths.icmDeaths: icm Module
deaths.netDeaths: netsim Module
deleteAttrDelete Elements from Attribute List
discord_edgelistDiscordant Edgelist from NetworkDynamic Object
dissolution_coefsDissolution Coefficients for Stochastic Network Models
edgelist_censorTable of Edge Censoring
edgelist_meanageMean Age of Partnerships over Time
edges_correctAdjustment for the Edges Coefficient with Changing Network...
EpiModel-packageMathematical Modeling of Infectious Disease Dynamics
epiwebEpiModel Web
geom_bandsggplot2 geom for Quantile Bands
get_attr_propProportional Table of Vertex Attributes
get_degreeGet Individual Degree from Network or Edgelist
get_formula_termsOutputs Formula Terms into a Character Vector
get_networkExtract networkDynamic Object from Network Epidemic Model
get_nwparamExtract Network Model Parameters
get_nwstatsExtract Network Statistics from Network Epidemic Model
get_prev.icmGet Epidemic Output from icm Model
get_prev.netGet Epidemic Output from netsim Model
get_simsExtract Network Simulations
get_transmatExtract Transmissions Matrix from Network Epidemic Model
icmStochastic Individual Contact Models
idmodeMode Numbers for Bipartite Network
infection.icmPrimary Infection Module for icm
infection.netPrimary Infection Module for netsim
init.dcmInitial Conditions for Deterministic Compartmental Models
initialize.icmInitialization: icm Module
initialize.netInitialization: netsim Module
init.icmInitial Conditions for Stochastic Individual Contact Models
init.netInitial Conditions for Stochastic Network Models
init_pidsPersistent ID Initialization
init_status.icmDisease Status Initialization Module for icm
init_status.netDisease Status Initialization Module for netsim
mcatWrite Out Test Progress to Console
merge.icmMerge Data across Stochastic Individual Contact Model...
merge.netsimMerge Model Simulations Across netsim Objects
modeidsID Numbers for Bipartite Network
modules.icmModules for Stochastic Individual Contact Models
modules.netModules for Stochastic Network Models
mutate_epiAdd New Epidemiology Variables
netdxDynamic Network Model Diagnostics
netestDynamic Network Model Estimation
netsimStochastic Network Models
param.dcmEpidemic Parameters for Deterministic Compartmental Models
param.icmEpidemic Parameters for Stochastic Individual Contact Models
param.netEpidemic Parameters for Stochastic Network Models
plot.dcmPlot Data from a Deterministic Compartmental Epidemic Model
plot.icmPlot Data from a Stochastic Individual Contact Epidemic Model
plot.netdxPlot Dynamic Network Model Diagnostics
plot.netsimPlot Data from a Stochastic Network Epidemic Model
plot.transmatPlot transmat infection tree in one of several styles
recovery.icmRecovery: icm Module
recovery.netRecovery: netsim Module
resim_netsResimulate Dynamic Network at Time 2+
saveout.dcmSave dcm Data to Output List Format
saveout.icmSave icm Data to Output List Format
saveout.netSave netsim Data to Output List Format
sim_netsSimulate Dynamic Network at Time 1
split_bipUpdate Attribute Values for a Bipartite Network
ssampleStable Sampling Function
summary.dcmSummary Model Statistics
summary.icmSummary Model Statistics
summary.netestSummary for Network Model Fit
summary.netsimSummary Model Statistics
test_icmTest the Model Output from a Stochastic Individual Contact...
test_netTest the Model Output from a Network Model
transcoObtain Transparent Colors
truncate_simTruncate Simulation Time Series
update_dissolutionAdjust Dissolution Component of Network Model Fit
update_nwattrUpdates Vertex Attributes for Incoming Vertices
verbose.dcmProgress Print Module for Deterministic Compartmental Models
verbose.icmProgress Print Module for Stochastic Individual Contact...
verbose.netProgress Print Module for Stochastic Network Models
EpiModel documentation built on Jan. 25, 2018, 5 p.m.