plot.transmat: Plot transmat Infection Tree in Three Styles

In EpiModel: Mathematical Modeling of Infectious Disease Dynamics

Plot transmat Infection Tree in Three Styles

Description

Plots the transmission matrix tree from from get_transmat in one of three styles: a phylogram, a directed network, or a transmission timeline.

Usage

## S3 method for class 'transmat'
plot(x, style = c("phylo", "network", "transmissionTimeline"), ...)

Arguments

x	A transmat object to be plotted.
style	Character name of plot style. One of "phylo", "network", or "transmissionTimeline".
...	Additional plot arguments to be passed to lower-level plot functions (plot.network, plot.phylo, or transmissionTimeline).

Details

The phylo plot requires the ape package. The transmissionTimeline plot requires that the ndtv package.

See Also

plot.network, plot.phylo, transmissionTimeline.

EpiModel documentation built on July 9, 2023, 5:21 p.m.