inst/stan/docs/mainpage.md

In EpiNow2: Estimate and Forecast Real-Time Infection Dynamics

EpiNow2 is an R package for estimating the time-varying reproduction number, growth rate, and doubling time from right truncated data.

The package uses Stan for the core modelling and R for pre-processing and post-processing of inputs and outputs.

This website covers the documentation of the Stan code/functions (See the next tab).

Documentation structure

The documentation is organized by function groups, with related functions grouped together:

Each function page includes:

• A brief description of the function's purpose
• Detailed explanation of the function's behavior
• Parameter descriptions
• Return value information
• Call and caller graphs
• Collaboration graphs
• Referencing and referenced functions

EpiNow2 main website

Click here to return to the main EpiNow2 website.

EpiNow2 documentation built on June 17, 2026, 1:07 a.m.