estimates_by_report_date: Estimate Cases by Report Date

In EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters

Estimate Cases by Report Date

Description

Either extracts or converts reported cases from an input data table. For output from estimate_infections this is a simple filtering step.

Usage

estimates_by_report_date(
  estimates,
  CrIs = c(0.2, 0.5, 0.9),
  target_folder = NULL,
  samples = TRUE
)

Arguments

estimates	List of data frames as output by estimate_infections
CrIs	Numeric vector of credible intervals to calculate.
target_folder	Character string specifying where to save results (will create if not present).
samples	Logical, defaults to TRUE. Should samples be saved

Value

A list of samples and summarised estimates of estimated cases by date of report.

Author(s)

Sam Abbott

EpiNow2 documentation built on Sept. 26, 2023, 5:11 p.m.