save_estimate_infections: Save Estimated Infections
In EpiNow2: Estimate and Forecast Real-Time Infection Dynamics

View source: R/epinow-internal.R

save_estimate_infections

R Documentation

Save Estimated Infections

Description

Saves output from estimate_infections to a target directory.

Usage

save_estimate_infections(
  estimates,
  target_folder = NULL,
  samples = TRUE,
  return_fit = TRUE,
  CrIs = c(0.2, 0.5, 0.9)
)

Arguments

`estimates`	List of data frames as output by `estimate_infections`
`target_folder`	Character string specifying where to save results (will create if not present).
`samples`	Logical, defaults to TRUE. Should samples be saved
`return_fit`	Logical, defaults to TRUE. Should the fit stan object be returned.
`CrIs`	Numeric vector of credible intervals to calculate.

Value

No return value, called for side effects

See Also

estimate_infections()

EpiNow2 documentation built on June 17, 2026, 1:07 a.m.

EpiNow2 index

Package overview README.md Case studies and use in the literature Examples: estimate_infections() Fitting delay distributions with estimate_dist() Forecasting multiple data streams Gaussian Process implementation details Getting started with EpiNow2 Model definition: estimate_dist() Model definition: estimate_infections() Model definition: estimate_secondary() Model definition: estimate_truncation() Model features Model overview Prior choice and specification guide Understanding delay distributions in EpiNow2 Using epinow() for running in production mode Workflow for Rt estimation and forecasting

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