summarise_key_measures: Summarise rt and cases

In EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters

Summarise rt and cases

Description

Produces summarised ⁠<data.frame>⁠s of output across regions. Used internally by regional_summary.

Usage

summarise_key_measures(
  regional_results = NULL,
  results_dir = NULL,
  summary_dir = NULL,
  type = "region",
  date = "latest"
)

Arguments

regional_results	A list of dataframes as produced by get_regional_results
results_dir	Character string indicating the directory from which to extract results.
summary_dir	Character string the directory into which to save results as a csv.
type	Character string, the region identifier to apply (defaults to region).
date	A Character string (in the format "yyyy-mm-dd") indicating the date to extract data for. Defaults to "latest" which finds the latest results available.

Value

A list of summarised Rt, cases by date of infection and cases by date of report

See Also

regional_summary

EpiNow2 documentation built on Oct. 31, 2024, 5:09 p.m.