Man pages for EstMix
Tumor Clones Percentage Estimations
| calc_1d | Return mixture estimation of a normal and a tumor Takes BAF,... |
| calc_1d_wgs | Return mixture estimation for percentage of normal cells and... |
| calc_2d | Return mixture estimation of a normal and 2 tumors Takes BAF,... |
| calc_2d_wgs | Return mixture estimation for percentage of normal cells and... |
| calc_3d | Return mixture estimation of a normal and 3 tumors Takes BAF,... |
| calcll_1d_baf | calculate baf_1d for 1 normal + 1 tumor case |
| calcll_baf | calculate baf for 1 normal + 2 tumors case |
| calcll_cpp | calculate likelihood for 1 normal + 2 tumors case |
| calcll_p1_cpp | calculate likelihood for 1 normal + 1 tumor case |
| calcll_p3 | calculate likelihood for 1 normal + 3 tumors case |
| calc_n | return sqrt(n) |
| combine_close_seg | combine close segmentation |
| est_mixture | It is a function that takes the LRR obtained from SNP array... |
| est_mixture_wgs | It is a function that takes the count data obtained from... |
| example_data | ExampleData |
| f_baf | f_baf |
| get_segmentation | calculate segmentation |
| get_var_tcn_baf | get_var_tcn_baf |
| mean2 | trancate data and take mean |
| preprocessing | Preprocessing data |
| seg_eg | Segmentation |
| sel_scale_1d | select scale for 1 normal + 1 tumor case |
| sel_scale_1d_wgs | select scale for 1 normal + 1 tumor case for wgs data |
| sel_scale_2d | select scale for 1 normal + 2 tumors case |
| sel_scale_2d_wgs | select scale for 1 normal + 2 tumors case for wgs data |
| wgs_eg | wgsData |
