Description Usage Arguments Value
Return mixture estimation for percentage of normal cells and tumor (1 normal + 1 tumor) with wgs data
Takes baf
, lrr
, n_baf
and nrc
1 | calc_1d_wgs(baf, lrr, n_baf, nrc)
|
baf |
a numeric vector. Each element is the mean adjusted B allele frequency for that segment, calculated as the mean of baf_tumor/baf_normal/2 for that segment |
lrr |
a numeric vector. Each element is the log ratio of the tumor read count and the normal read count for a segment, defined as log(tumorCount/normalCount) |
n_baf |
a numeric vector |
nrc |
a numeric vector. Each element is the normal read count of the segment divided by two |
sol1 |
a numeric number. It provides the estimated percentages of normal from the best solution. The number is the percentage of the estimated normal percentage. |
sol2 |
a numeric number. It provides the estimated percentages of normal from the second best solution. The number is the percentage of the estimated normal percentage. |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.