Man pages for EstMix
Tumor Clones Percentage Estimations

calc_1dReturn mixture estimation of a normal and a tumor Takes BAF,...
calc_1d_wgsReturn mixture estimation for percentage of normal cells and...
calc_2dReturn mixture estimation of a normal and 2 tumors Takes BAF,...
calc_2d_wgsReturn mixture estimation for percentage of normal cells and...
calc_3dReturn mixture estimation of a normal and 3 tumors Takes BAF,...
calcll_1d_bafcalculate baf_1d for 1 normal + 1 tumor case
calcll_bafcalculate baf for 1 normal + 2 tumors case
calcll_cppcalculate likelihood for 1 normal + 2 tumors case
calcll_p1_cppcalculate likelihood for 1 normal + 1 tumor case
calcll_p3calculate likelihood for 1 normal + 3 tumors case
calc_nreturn sqrt(n)
combine_close_segcombine close segmentation
est_mixtureIt is a function that takes the LRR obtained from SNP array...
est_mixture_wgsIt is a function that takes the count data obtained from...
example_dataExampleData
f_baff_baf
get_segmentationcalculate segmentation
get_var_tcn_bafget_var_tcn_baf
mean2trancate data and take mean
preprocessingPreprocessing data
seg_egSegmentation
sel_scale_1dselect scale for 1 normal + 1 tumor case
sel_scale_1d_wgsselect scale for 1 normal + 1 tumor case for wgs data
sel_scale_2dselect scale for 1 normal + 2 tumors case
sel_scale_2d_wgsselect scale for 1 normal + 2 tumors case for wgs data
wgs_egwgsData
EstMix documentation built on Sept. 21, 2018, 6:30 p.m.