calc_1d: Return mixture estimation of a normal and a tumor Takes BAF,...
In EstMix: Tumor Clones Percentage Estimations
Description
Usage
Arguments
Value
Description
Return mixture estimation of a normal and a tumor
Takes BAF, LRR, chr, x, gt, seg_raw
Usage
1
calc_1d(BAF, LRR, chr, x, GT, seg_raw)
Arguments
BAF
vector containing B allen frequency (BAF)
LRR
vector
chr
vector
x
vector
GT
vector of factors containing genotype
seg_raw
dataframe about segmentation
Value
sol1
percentage of tumor for optimal solution 1
sol2
percentage of tumor 1 for optimal solution 2
EstMix documentation built on May 2, 2019, 7:25 a.m.
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Description Usage Arguments Value
Description
Return mixture estimation of a normal and a tumor Takes BAF, LRR, chr, x, gt, seg_raw
Usage
1 | calc_1d(BAF, LRR, chr, x, GT, seg_raw)
|
Arguments
BAF |
vector containing B allen frequency (BAF) |
LRR |
vector |
chr |
vector |
x |
vector |
GT |
vector of factors containing genotype |
seg_raw |
dataframe about segmentation |
Value
sol1 |
percentage of tumor for optimal solution 1 |
sol2 |
percentage of tumor 1 for optimal solution 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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