Files in EvoPhylo
Pre- And Postprocessing of Morphological Data from Relaxed Clock Bayesian Phylogenetics
MD5
NEWS.md
NAMESPACE
DESCRIPTION
R/treesWoffset.R
R/ST&P_FBD.R
R/CharPart.R
R/ST&P_Rates.R
R/helpers_beast2.R
R/SelectionStrength.R
R/helpers.R
inst/CITATION
inst/doc/offset_handling.Rmd
inst/doc/char-part.R
inst/doc/rates-selection_MrBayes.html
inst/doc/fbd-params.html
inst/doc/rates-selection_BEAST2.Rmd
inst/doc/char-part.html
inst/doc/data_treatment.html
inst/doc/rates-selection_BEAST2.R
inst/doc/rates-selection_BEAST2.html
inst/doc/char-part.Rmd
inst/doc/offset_handling.html
inst/doc/offset_handling.R
inst/doc/data_treatment.Rmd
inst/doc/fbd-params.R
inst/doc/fbd-params.Rmd
inst/doc/data_treatment.R
inst/doc/rates-selection_MrBayes.R
inst/doc/rates-selection_MrBayes.Rmd
inst/extdata/ex_offset.trees
inst/extdata/DataMatrix.nex
inst/extdata/Penguins_Morpho(VarCh)_Extant.nex
inst/extdata/Penguins_MCC_dna.t
inst/extdata/ex_offset.log
inst/extdata/Penguins_MCC_morpho_part1.t
inst/extdata/tree_mb_dummy.tre
inst/extdata/Penguins_log.log
inst/extdata/ex_offset.MCC.tre
inst/extdata/Penguins_MCC_morpho_part3.t
inst/extdata/ex_FBD_SA.log
inst/extdata/RateTable_Means_Clades.csv
inst/extdata/Penguins_Mol.nex
inst/extdata/RateTable_Medians_Clades.csv
inst/extdata/ex_pwt_rate_table.csv
inst/extdata/Penguins_Morpho(VarCha).nex
inst/extdata/ex_FBD_BDSKY.log
inst/extdata/Penguins_MCC_morpho_part2.t
build/vignette.rds
vignettes/offset_handling.Rmd
vignettes/rates-selection_BEAST2.Rmd
vignettes/references.bib
vignettes/char-part.Rmd
vignettes/data_treatment.Rmd
vignettes/fbd-params.Rmd
vignettes/rates-selection_MrBayes.Rmd
data/datalist
data/characters.rda
data/RateTable_Means_1p_Clades.rda
data/RateTable_Means_3p_Clades.rda
data/tree3p.rda
data/post_trees.rda
data/tree1p.rda
data/posterior1p.rda
data/tree_clock2.rda
data/tree_clock1.rda
data/posterior3p.rda
man/clockrate_summary.Rd
man/drop.dummy.mb.Rd
man/tree_clock1.Rd
man/FBD_reshape.Rd
man/plot_treerates_sgn.Rd
man/FBD_summary.Rd
man/make_clusters.Rd
man/characters.Rd
man/RateTable_Means_1p_Clades.Rd
man/get_pwt_rates_MrBayes.Rd
man/get_pwt_rates_BEAST2.Rd
man/offset.to.dummy.Rd
man/clock_reshape.Rd
man/tree3p.Rd
man/clockrate_reg_plot.Rd
man/write.beast.treedata.Rd
man/tree1p.Rd
man/tree_clock2.Rd
man/get_gower_dist.Rd
man/write_partitioned_alignments.Rd
man/drop.dummy.beast.Rd
man/offset.to.dummy.metadata.Rd
man/cluster_to_nexus.Rd
man/FBD_dens_plot.Rd
man/get_clockrate_table_BEAST2.Rd
man/posterior1p.Rd
man/post_trees.Rd
man/get_clockrate_table_MrBayes.Rd
man/posterior3p.Rd
man/combine_log.Rd
man/plot_back_rates.Rd
man/RateTable_Means_3p_Clades.Rd
man/clockrate_dens_plot.Rd
man/FBD_tests1.Rd
man/get_sil_widths.Rd
man/FBD_normality_plot.Rd
man/FBD_tests2.Rd
