API for ExomeDepth
Calls Copy Number Variants from Targeted Sequence Data
| Global functions | |
|---|---|
| .onLoad | Source code |
| AnnotateExtra | Man page |
| AnnotateExtra,ExomeDepth-method | Man page |
| C_hmm | Man page |
| CallCNVs | Man page |
| CallCNVs,ExomeDepth-method | Man page |
| Conrad.hg19.common.CNVs | Man page |
| ExomeCount | Man page |
| ExomeDepth-class | Man page |
| TestCNV | Man page |
| TestCNV,ExomeDepth-method | Man page |
| count.everted.reads | Man page Source code |
| countBam.everted | Man page Source code |
| countBamInGRanges.exomeDepth | Man page |
| exons.hg19 | Man page |
| exons.hg19.X | Man page |
| genes.hg19 | Man page |
| get.power.betabinom | Man page |
| getBamCounts | Man page Source code |
| get_loglike_matrix | Man page |
| initialize,ExomeDepth-method | Man page |
| plot,ANY-method | Man page |
| plot,ExomeDepth,ANY-method | Man page |
| plot,ExomeDepth-method | Man page |
| plot-methods | Man page |
| plot.ExomeDepth | Man page |
| qbetabinom | Man page Source code |
| qbetabinom.ab | Man page |
| select.reference.set | Man page Source code |
| somatic.CNV.call | Man page Source code |
| viterbi.hmm | Man page Source code |
