Files in ExomeDepth
Calls Copy Number Variants from Targeted Sequence Data

MD5
DESCRIPTION
NAMESPACE
inst/doc/ExomeDepth-vignette.pdf inst/doc/ExomeDepth-vignette.R
inst/doc/ExomeDepth-vignette.Rnw
vignettes/ExomeDepth-vignette.Rnw
R/tools.R R/optimize_reference_set.R R/zzz.R R/countBamInGranges.R R/class_definition.R R/annotate_extra.R R/plot_CNVs_method.R
src/elementary.c
src/check.h
src/gsl_sf_elementary.h
src/eval.h
src/gsl_sf_trig.h
src/gsl_message.h
src/hypot.c
src/gsl_sf_exp.h
src/gsl_complex_math.h
src/VP_infnan.c
src/VP_trig.c
src/ExomeDepth_init.c
src/gsl_sf_pow_int.h
src/math.c
src/gsl_sf_zeta.h
src/VP_gamma.c
src/error.c
src/gsl_sf_log.h
src/stream.c
src/hmm.cpp
src/VP_log.c
src/gsl_complex.h
src/gsl_machine.h
src/gsl_precision.h
src/log1p.c
src/ldfrexp.c
src/beta.c
src/gsl_inline.h
src/invhyp.c
src/gsl_sf_gamma.h
src/gsl_types.h
src/exp.c
src/gsl_errno.h
src/gsl_nan.h
src/chebyshev.h
src/VP_psi.c
src/VP_zeta.c
src/gsl_sf_psi.h
src/config.h
src/error.h
src/gsl_pow_int.h
src/fdiv.c
src/gsl_math.h
src/gsl_sys.h
src/CNV_estimate.cpp
src/gsl_sf_result.h
man/get.power.betabinom.Rd man/exons.hg19.X.Rd man/qbetabinom.ab.Rd man/viterbi.hmm.Rd man/countBamInGRanges.exomeDepth.Rd man/countBam.everted.Rd man/exons.hg19.Rd man/get_loglike_matrix.Rd man/TestCNV-ExomeDepth-method.Rd man/plot-methods.Rd man/C_hmm.Rd man/getBamCounts.Rd man/qbetabinom.Rd man/somatic.CNV.call.Rd man/ExomeCount.Rd man/genes.hg19.Rd man/count.everted.reads.Rd man/ExomeDepth-class.Rd man/CallCNVs-ExomeDepth-method.Rd man/AnnotateExtra-ExomeDepth-method.Rd man/Conrad.hg19.common.CNVs.Rd man/select.reference.set.Rd man/initialize-ExomeDepth-method.Rd
build/vignette.rds
data/exons.hg19.X.RData
data/Conrad.hg19.RData
data/genes.hg19.RData
data/ExomeCount.RData
data/exons.hg19.RData
data/datalist
ExomeDepth documentation built on Jan. 9, 2020, 1:09 a.m.