Nothing
## ----setup, echo = FALSE------------------------------------------------------
knitr::opts_chunk$set(collapse = FALSE,
comment = "#>",
prompt = FALSE,
tidy = FALSE,
echo = TRUE,
message = FALSE,
warning = FALSE,
# Default figure options:
dpi = 100,
fig.align = 'center',
fig.height = 6.0,
fig.width = 6.5,
out.width = "580px")
## ----pkgs, echo = FALSE, message = FALSE, results = 'hide'--------------------
library(FFTrees)
## ----titanic-image, fig.align = "center", out.width="50%", echo = FALSE-------
knitr::include_graphics("../inst/titanic.jpg")
## ----titanic-data-head--------------------------------------------------------
set.seed(12) # reproducible randomness
rcases <- sort(sample(1:nrow(titanic), 10))
# Sample of data:
knitr::kable(titanic[rcases, ], caption = "A sample of 10 observations from the `titanic` data.")
## ----titanic-fft, message = FALSE, results = 'hide'---------------------------
# Create FFTs for the titanic data:
titanic.fft <- FFTrees(formula = survived ~.,
data = titanic,
main = "Surviving the Titanic",
decision.labels = c("Died", "Survived"))
## ----titanic-cues, fig.width = 6, fig.height = 6, out.width = "500px", fig.cap = "**Figure 1**: Cue accuracies of FFTs predicting survival in the `titanic` dataset."----
plot(titanic.fft, what = "cues", main = "Cues predicting Titanic survival")
## ----titanic-plot, fig.width = 7, fig.height = 7, fig.align = 'center', out.width = "75%", fig.cap="**Figure 2**: Plotting the best FFT of an `FFTrees` object."----
plot(titanic.fft, tree = 1)
## ----titanic-what-tree, fig.align = 'center', fig.height = 6, fig.width = 9, out.width = "550px", fig.cap = "**Figure 3**: An FFT diagram with icon arrays on exit nodes."----
# Plot tree diagram with icon arrays:
plot(titanic.fft, what = "icontree",
n.per.icon = 50, show.iconguide = TRUE)
## ----titanic-what-roc, fig.align = 'center', fig.height = 6, fig.width = 7, out.width = "550px", fig.cap = "**Figure 4**: Performance comparison of FFTs in ROC space."----
# Plot only the performance comparison in ROC space:
plot(titanic.fft, what = "roc")
## ----titanic-args, fig.align = 'center', fig.height = 7, fig.width = 9, out.width = "550px", fig.cap = "**Figure 5**: Plotting selected elements."----
# Hide some elements of the FFT plot:
plot(titanic.fft,
show.icons = FALSE, # hide icons
show.iconguide = FALSE, # hide icon guide
show.header = FALSE # hide header
)
## ----titanic-data-tree-best-train, eval = FALSE-------------------------------
# plot(titanic.fft, tree = "best.train")
## ----titanic-data-tree-best-test, eval = FALSE--------------------------------
# plot(titanic.fft, tree = "best.test")
## ----titanic-pred, message = FALSE, results = 'hide'--------------------------
set.seed(100) # for replicability of the training/test split
titanic.pred.fft <- FFTrees(formula = survived ~.,
data = titanic,
train.p = .50, # use 50% to train, 50% to test
main = "Titanic",
decision.labels = c("Died", "Survived")
)
## ----titanic-train, fig.cap = "**Figure 6**: Plotting the best FFT on _training_ data."----
# print(titanic.pred.fft, tree = 1)
plot(titanic.pred.fft, tree = 1)
## ----titanic-test, fig.cap = "**Figure 7**: Plotting the best FFT on _test_ data."----
# print(titanic.pred.fft, data = "test", tree = 1)
plot(titanic.pred.fft, data = "test", tree = 1)
## ----titanic-viz-2, fig.cap = "**Figure 8**: Plotting Tree\ #2."--------------
plot(titanic.pred.fft, data = "test", tree = 2)
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