R/FSA-defunct.R

Defines functions Schnute Subset residPlot plotBinResp mapvalues hoCoef FSANews fitPlot filterD diags compSlopes compIntercepts chooseColors bootCase

Documented in bootCase chooseColors compIntercepts compSlopes diags filterD fitPlot hoCoef mapvalues plotBinResp residPlot Schnute Subset

#' @title DEFUNCT functions.
#' @description These functions were once part of FSA but have now been removed.
#' @param \dots Additional arguments to pass through.
#' @name FSA-defunct

#' @rdname FSA-defunct
#' @export
bootCase <- function(...) {
  .Defunct(msg="'bootCase' has been removed; use 'car::Boot' with 'match='case'' (the default) for the same functionality.")
}

#' @rdname FSA-defunct
#' @export
chooseColors <- function(...) {
  .Defunct(msg="'chooseColors' has been removed; use one of many other available resources to choose appropriate colors.")
}

#' @rdname FSA-defunct
#' @export
compIntercepts <- function(...) {
  .Defunct(msg="'compIntercepts' has been removed; use 'emmeans' from the 'emmeans' package as described in the fishR blog post of 12-May-2021.")
}

#' @rdname FSA-defunct
#' @export
compSlopes <- function(...) {
  .Defunct(msg="'compSlopes' has been removed; use 'emtrends' from the 'emmeans' package as described in the fishR blog post of 11-May-2021.")
}

#' @rdname FSA-defunct
#' @export
diags <- function(...) {
  .Defunct(msg="'diags' has been removed (to 'FSAmisc' on GitHub).")
}

#' @rdname FSA-defunct
#' @export
filterD <- function(...) {
  .Defunct(msg="'filter' has been removed (to 'FSAmisc' on GitHub); please use 'droplevels' after 'subset' or 'dplyr::filter' for the same result (see fishR post from 26-May-2021).")
}

#' @rdname FSA-defunct
#' @export
fitPlot <- function(...) {
  .Defunct(msg="'fitPlot' has been removed (to 'FSAmisc' on GitHub).")
}

#' @rdname FSA-defunct
#' @export
fsaNews <- FSANews <- function(...) {
  .Defunct(msg="'fsaNews' and 'FSANews' have been removed (to 'FSAmisc' on GitHub).")
}

#' @rdname FSA-defunct
#' @export
hoCoef <- function(...) {
  .Defunct(msg="'hoCoef' has been removed (to 'FSAmisc' on GitHub).")
}

#' @rdname FSA-defunct
#' @export
mapvalues <- function(...) {
  .Defunct(msg="'FSA::mapvalues' has been removed; use 'plyr::mapvalues' instead for the same functionality.")
}

#' @rdname FSA-defunct
#' @export
plotBinResp <- function(...) {
  .Defunct(msg="'plotBinResp' has been removed; use 'ggplot2' as described in the fishR blog post of 25-May-2021.")
}

#' @rdname FSA-defunct
#' @export
residPlot <- function(...) {
  .Defunct(msg="'residPlot' has been removed (to 'FSAmisc' on GitHub).")
}

#' @rdname FSA-defunct
#' @export
Subset <- function(...) {
  .Defunct(msg="'Subset' has been removed; use 'subset' or 'dplyr::filter' followed by 'droplevels' for the same functionality.")
}

#' @rdname FSA-defunct
#' @export
Schnute <- function(...) {
  .Defunct(msg="'Schnute' has been removed; use 'Schnute <- makeGrowthFun(\"Schnute\")'.")
}

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FSA documentation built on June 8, 2025, 11:56 a.m.