Familias: Probabilities for Pedigrees Given DNA Data

An interface to the core Familias functions (www.familias.name), which are programmed in C++.

Author
Petter Mostad, Thore Egeland, Ivar Simonsson
Date of publication
2016-02-18 15:13:56
Maintainer
Petter Mostad <mostad@chalmers.se>
License
GPL-2
Version
2.4
URLs

View on CRAN

Man pages

ConvertPed
Converts pedigree data frame to kinship2 pedigree object
FamiliasLocus
Creates an object with information on a locus, including its...
Familias-package
Familias: Inferring paternity and indentification based on...
FamiliasPedigree
Creates an object storing a pedigree.
FamiliasPosterior
Calculates posterior probabilities and likelihoods for...
FamiliasPrior
Calculates a prior distribution for a list of pedigrees
NorwegianFrequencies
A list of markers with allele names and frequencies.
plot.FamiliasPedigree
Plotting function for FamiliasPedigree objects

Files in this package

Familias
Familias/src
Familias/src/Pedigree.h
Familias/src/read.cpp
Familias/src/help.cpp
Familias/src/alsys.h
Familias/src/PedigreeSet.cpp
Familias/src/aldata.cpp
Familias/src/family.h
Familias/src/GroupOfPersons.h
Familias/src/GroupOfPersons.cpp
Familias/src/Node.cpp
Familias/src/cutset.cpp
Familias/src/read.h
Familias/src/odds.h
Familias/src/pater.h
Familias/src/FamInterface.cpp
Familias/src/main.cpp
Familias/src/PedigreeList.h
Familias/src/person.h
Familias/src/special.cpp
Familias/src/help.h
Familias/src/aldata.h
Familias/src/table.h
Familias/src/table.cpp
Familias/src/PedigreeList.cpp
Familias/src/FamInterface.h
Familias/src/family.cpp
Familias/src/person.cpp
Familias/src/pater.cpp
Familias/src/Node.h
Familias/src/alsys.cpp
Familias/src/odds.cpp
Familias/src/Element.cpp
Familias/src/Element.h
Familias/src/cutset.h
Familias/src/special.h
Familias/src/PedigreeSet.h
Familias/src/Pedigree.cpp
Familias/NAMESPACE
Familias/data
Familias/data/NorwegianFrequencies.rda
Familias/R
Familias/R/plot.FamiliasPedigree.R
Familias/R/FamiliasPedigree.R
Familias/R/FamiliasPosterior.R
Familias/R/ConvertPed.R
Familias/R/FamiliasLocus.R
Familias/R/FamiliasPrior.R
Familias/MD5
Familias/DESCRIPTION
Familias/man
Familias/man/FamiliasPosterior.Rd
Familias/man/FamiliasLocus.Rd
Familias/man/Familias-package.Rd
Familias/man/FamiliasPedigree.Rd
Familias/man/FamiliasPrior.Rd
Familias/man/NorwegianFrequencies.Rd
Familias/man/plot.FamiliasPedigree.Rd
Familias/man/ConvertPed.Rd