phi_psi_3D: phi_psi_3D

In Fiscore: Effective Protein Structural Data Visualisation and Exploration

Description

Function plots a 3D scatter plot with a secondary structure element visualisation based on PDB file data; NOTE: NA refers to unidentified region, e.g., a disordered region. The plot includes information, such as phi and psi dihedral angles as well as normalised B-factor values.

Usage

phi_psi_3D(pdb_df)

Arguments

pdb_df

Requires a PDB data frame generated by PDB_prepare

Value

Interactive plot

Examples

path_to_processed_PDB<- system.file("extdata", "pdb_df.tabular", package="Fiscore")
# basic usage of phi_psi_3D
pdb_df<-read.table(path_to_processed_PDB)
phi_psi_3D(pdb_df)

Fiscore documentation built on Sept. 5, 2021, 5:51 p.m.