FixSeqMTP: Fixed Sequence Multiple Testing Procedures

Generalized Fixed Sequence Multiple Testing Procedures (g-FSMTPs) are used to test a sequence of pre- ordered hypotheses. The proposed three Family-wise Error Rate (FWER) controlling g-FSMTPs utilize numbers of rejections and acceptances, all the procedures are designed under arbitrary dependence. The proposed two False Discovery Rate (FDR) controlling g-FSMTPs allows more but a given number of acceptances (k>=1), the procedures are designed for arbitrary dependence and independence. The main functions for each proposed g-FSMTPs are designed to calculate adjusted p-values and critical values, respectively. For users' convenience, the output results also include the option of decision rules for convenience.

Author
Yalin Zhu, Wenge Guo
Date of publication
2016-12-01 19:44:22
Maintainer
Yalin Zhu <yalin.zhu@outlook.com>
License
GPL (>= 2)
Version
0.1.0

View on CRAN

Man pages

bisection.FDR
Bisection algorithm (FDR)
bisection.FWER
Bisection algorithm (FWER)
FixSeqMTP
FixSeqMTP : Tools for Fixed Sequence Multiple Testing...
FSFDR.arbidept.cv
Critical Values for Fixed Sequence FDR Controlling Procedures...
FSFDR.arbidept.p.adjust
Adjusted P-values for Fixed Sequence FDR Controlling...
FSFDR.indept.cv
Critical Values for Fixed Sequence FDR Controlling Procedures...
FSFDR.indept.p.adjust
Adjusted P-values for Fixed Sequence FDR Controlling...
FSFWER.arbidept.cv
Critical Values for Fixed Sequence FWER Controlling...
FSFWER.arbidept.p.adjust
Adjusted P-values for Fixed Sequence FWER Controlling...
optim.accept.adjp
Objective function to be optimized (2)
optim.arbidept.adjp
Objective function to be optimized (4)
optim.both.adjp
Objective function to be optimized (3)
optim.indept.adjp
Objective function to be optimized (5)
optim.reject.adjp
Objective function to be optimized (1)

Files in this package

FixSeqMTP
FixSeqMTP/NAMESPACE
FixSeqMTP/R
FixSeqMTP/R/FixSeqMTP.R
FixSeqMTP/R/FSFWER.R
FixSeqMTP/R/FSFDR.R
FixSeqMTP/MD5
FixSeqMTP/DESCRIPTION
FixSeqMTP/man
FixSeqMTP/man/optim.reject.adjp.Rd
FixSeqMTP/man/optim.arbidept.adjp.Rd
FixSeqMTP/man/FSFDR.arbidept.p.adjust.Rd
FixSeqMTP/man/FSFDR.arbidept.cv.Rd
FixSeqMTP/man/bisection.FWER.Rd
FixSeqMTP/man/FSFWER.arbidept.cv.Rd
FixSeqMTP/man/optim.indept.adjp.Rd
FixSeqMTP/man/FSFDR.indept.cv.Rd
FixSeqMTP/man/FSFDR.indept.p.adjust.Rd
FixSeqMTP/man/optim.both.adjp.Rd
FixSeqMTP/man/FSFWER.arbidept.p.adjust.Rd
FixSeqMTP/man/optim.accept.adjp.Rd
FixSeqMTP/man/bisection.FDR.Rd
FixSeqMTP/man/FixSeqMTP.Rd