paleotree.record.to.fossils | R Documentation |
The returned tree is in paleotree format, with zero-length edges leading to tips at bifurcation and anagenetic events. Fossils and taxonomy are only specified on non-zero-length edges. The label assigned to the parent of the origin or root will be zero.
paleotree.record.to.fossils(record, alphanumeric = TRUE)
record |
fossilRecordSimulation object. |
alphanumeric |
If TRUE function will return alphanumeric species labels (i.e. species labels contain the "t" prefix) (default). If FALSE function will return numeric only species labels. |
A list containing the converted tree, taxonomy and fossils
taxonomy
, fossils
, fossils.to.paleotree.record
if (requireNamespace("paleotree", quietly = TRUE)) { # simulate record record = paleotree::simFossilRecord(p=0.1, q=0.1,r=0.1, nruns=1, nTotalTaxa=c(30,40), nExtant=0, nSamp = c(5,25)) # transform format l_tf = paleotree.record.to.fossils(record) l_tf$tree l_tf$taxonomy l_tf$fossils }
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