sim.taxonomy | R Documentation |
Simulate a taxonomy object relating species identity to a phylo object under a mixed model of speciation.
Anagenetic and cryptic species can also be added later using the sim.anagenetic.species
and sim.cryptic.species
functions.
sim.taxonomy(tree, beta = 0, lambda.a = 0, kappa = 0, root.edge = TRUE)
tree |
Phylo object. |
beta |
Probability of bifurcating speciation. Default = 0. |
lambda.a |
Rate of anagenetic speciation. Default = 0. |
kappa |
Probability that speciation event is cryptic. Default = 0. |
root.edge |
If TRUE include root edge. Default = TRUE. |
An object of class taxonomy.
taxonomy
t = ape::rtree(10) sim.taxonomy(t, 0.5, 0.1, 0.5)
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