FunCluster: Functional Profiling of Microarray Expression Data
Version 1.09

FunCluster performs a functional analysis of microarray expression data based on Gene Ontology & KEGG functional annotations. From expression data and functional annotations FunCluster builds classes of putatively co-regulated biological processes through a specially designed clustering procedure.

AuthorCorneliu Henegar <corneliu@henegar.info>
Date of publication2012-07-23 10:35:30
MaintainerCorneliu Henegar <corneliu@henegar.info>
LicenseGPL (>= 2)
Version1.09
URL http://corneliu.henegar.info/FunCluster.htm
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("FunCluster")

Popular man pages

annot.date: Internal routine or variable
annot.list: Internal routine or variable
cluster.c: Internal routine or variable
fdr: Internal routine or variable
gene.correl: Internal routine or variable
Kegg: Internal routine or variable
resterm: Internal routine or variable
See all...

All man pages Function index File listing

Man pages

adipose: Gene Expression in Human White Adipose Tissue
annotate: Internal routine or variable
AnnotationIndirecte: Internal routine or variable
Annotations: Functional Profiling of Microarray RNA Expression Data
annot.date: Internal routine or variable
annot.list: Internal routine or variable
ChargerKegg: Internal routine or variable
cluster.c: Internal routine or variable
clusterm.cc: Internal routine or variable
clusterm.cs: Internal routine or variable
down: Internal routine or variable
fdr: Internal routine or variable
fdr.adjust: Internal routine or variable
fdr.basic: Internal routine or variable
fdr.master: Internal routine or variable
filter.genes: Internal routine or variable
FunCluster: Functional Profiling of Microarray Expression Data
FunCluster.R-package: Functional Profiling of Microarray Expression Data
f.version: Internal routine or variable
gene.correl: Internal routine or variable
GeneInfo: Internal routine or variable
GeneInfoSC: Internal routine or variable
genes.lst: Internal routine or variable
goAndLL: Internal routine or variable
GO.terms.hierarchy: Internal routine or variable
GO.terms.name: Internal routine or variable
HS.GO.DIR.BP.file.annot: Internal routine or variable
HS.GO.DIR.CC.file.annot: Internal routine or variable
HS.GO.DIR.MF.file.annot: Internal routine or variable
HS.GO.IND.BP.file.annot: Internal routine or variable
HS.GO.IND.CC.file.annot: Internal routine or variable
HS.GO.IND.MF.file.annot: Internal routine or variable
HS.KEGG.file.annot: Internal routine or variable
HS.locus.cyto: Internal routine or variable
HS.locus.name: Internal routine or variable
insulin: Insulin Coordinated Regulation of Gene Expression in Human...
Kegg: Internal routine or variable
KEGG.terms.name: Internal routine or variable
location.analysis: Internal routine or variable
main.loop: Internal routine or variable
MakeCorrespondanceLLGO: Internal routine or variable
MakeGoHierarchy: Internal routine or variable
MakeGoTerms: Internal routine or variable
MakeLocusNames: Internal routine or variable
MiseEnFormeKegg: Internal routine or variable
MiseEnFormeKeggSC: Internal routine or variable
MM.GO.DIR.BP.file.annot: Internal routine or variable
MM.GO.DIR.CC.file.annot: Internal routine or variable
MM.GO.DIR.MF.file.annot: Internal routine or variable
MM.GO.IND.BP.file.annot: Internal routine or variable
MM.GO.IND.CC.file.annot: Internal routine or variable
MM.GO.IND.MF.file.annot: Internal routine or variable
MM.KEGG.file.annot: Internal routine or variable
MM.locus.cyto: Internal routine or variable
MM.locus.name: Internal routine or variable
pclust: Internal routine or variable
preliminary: Internal routine or variable
prop.alt: Internal routine or variable
pterm: Internal routine or variable
pvalues: Internal routine or variable
ref.list: Internal routine or variable
resclust: Internal routine or variable
resterm: Internal routine or variable
SC.GO.DIR.BP.file.annot: Internal routine or variable
SC.GO.DIR.CC.file.annot: Internal routine or variable
SC.GO.DIR.MF.file.annot: Internal routine or variable
SC.GO.IND.BP.file.annot: Internal routine or variable
SC.GO.IND.CC.file.annot: Internal routine or variable
SC.GO.IND.MF.file.annot: Internal routine or variable
SC.KEGG.file.annot: Internal routine or variable
SC.locus.cyto: Internal routine or variable
SC.locus.name: Internal routine or variable
storey: Internal routine or variable
term.compare: Internal routine or variable
TroisiemeFiltrage: Internal routine or variable
up: Internal routine or variable

Functions

Files

MD5
R
R/FunCluster.R
R/Annotations.R
R/sysdata.rda
copying
man
man/SC.GO.DIR.BP.file.annot.Rd
man/HS.locus.name.Rd
man/storey.Rd
man/annotate.Rd
man/MM.GO.IND.BP.file.annot.Rd
man/FunCluster.R-package.Rd
man/MakeGoTerms.Rd
man/MM.GO.DIR.BP.file.annot.Rd
man/gene.correl.Rd
man/HS.GO.DIR.BP.file.annot.Rd
man/pterm.Rd
man/HS.GO.IND.BP.file.annot.Rd
man/pclust.Rd
man/SC.locus.name.Rd
man/AnnotationIndirecte.Rd
man/MakeGoHierarchy.Rd
man/adipose.Rd
man/SC.KEGG.file.annot.Rd
man/KEGG.terms.name.Rd
man/Annotations.Rd
man/MM.GO.DIR.CC.file.annot.Rd
man/GO.terms.name.Rd
man/HS.KEGG.file.annot.Rd
man/MiseEnFormeKeggSC.Rd
man/MakeCorrespondanceLLGO.Rd
man/SC.GO.IND.MF.file.annot.Rd
man/main.loop.Rd
man/prop.alt.Rd
man/annot.date.Rd
man/resclust.Rd
man/HS.locus.cyto.Rd
man/MM.GO.DIR.MF.file.annot.Rd
man/fdr.master.Rd
man/Kegg.Rd
man/TroisiemeFiltrage.Rd
man/MM.locus.cyto.Rd
man/pvalues.Rd
man/annot.list.Rd
man/term.compare.Rd
man/up.Rd
man/SC.GO.IND.BP.file.annot.Rd
man/MakeLocusNames.Rd
man/FunCluster.Rd
man/HS.GO.IND.MF.file.annot.Rd
man/MiseEnFormeKegg.Rd
man/GeneInfoSC.Rd
man/MM.GO.IND.MF.file.annot.Rd
man/fdr.basic.Rd
man/fdr.adjust.Rd
man/HS.GO.IND.CC.file.annot.Rd
man/MM.KEGG.file.annot.Rd
man/ChargerKegg.Rd
man/filter.genes.Rd
man/goAndLL.Rd
man/SC.locus.cyto.Rd
man/ref.list.Rd
man/HS.GO.DIR.CC.file.annot.Rd
man/clusterm.cs.Rd
man/GO.terms.hierarchy.Rd
man/preliminary.Rd
man/MM.locus.name.Rd
man/resterm.Rd
man/clusterm.cc.Rd
man/MM.GO.IND.CC.file.annot.Rd
man/SC.GO.DIR.MF.file.annot.Rd
man/SC.GO.DIR.CC.file.annot.Rd
man/fdr.Rd
man/insulin.Rd
man/f.version.Rd
man/genes.lst.Rd
man/down.Rd
man/location.analysis.Rd
man/cluster.c.Rd
man/HS.GO.DIR.MF.file.annot.Rd
man/SC.GO.IND.CC.file.annot.Rd
man/GeneInfo.Rd
NAMESPACE
DESCRIPTION
data
data/adipose.rda
data/insulin.rda
FunCluster documentation built on May 19, 2017, 9:19 p.m.

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