subset_func_and_abun_tables: Utility function to subset function copy number and taxonomic...

In FuncDiv: Compute Contributional Diversity Metrics

Utility function to subset function copy number and taxonomic abundance tables

Description

The input tables will be returned except subset to the same taxa ids. Any functions and / or samples that are totally absent after this step will be dropped.

Usage

subset_func_and_abun_tables(func_table, abun_table, func_ids = NULL)

Arguments

func_table	data.frame object containing function copy numbers, with rows as functions and columns as taxa.
abun_table	data.frame object containing taxonomic abundances across samples, with rows as taxa and columns as samples.
func_ids	optional character vector of function ids to retain (all other rows of func_tab will be removed).

Value

list containing subsetted function and abundance data.frames as separate elements.

FuncDiv documentation built on March 31, 2023, 8:12 p.m.