GANPA: Gene Association Network-based Pathway Analysis

This package implements a network-based gene weighting algorithm for pathways, as well as a gene-weighted gene set analysis approach for microarray data pathway analysis.

Author
Zhaoyuan Fang, Weidong Tian and Hongbin Ji
Date of publication
2011-05-29 18:47:15
Maintainer
Zhaoyuan Fang <fangzhaoyuan@sibs.ac.cn>
License
GPL-2
Version
1.0

View on CRAN

Man pages

GANPA-package
Gene Association Network-based Pathway Analysis
GSE.Test.Main
Gene-weighted pathway significance analysis
weight.gsets.test
Weight genes in pathways with a gene association network
weight.gsets.with.msprot
Weight genes in pathways with a gene association network...

Files in this package

GANPA
GANPA/Read-and-delete-me
GANPA/NAMESPACE
GANPA/man
GANPA/man/GANPA-package.Rd
GANPA/man/weight.gsets.test.Rd
GANPA/man/weight.gsets.with.msprot.Rd
GANPA/man/GSE.Test.Main.Rd
GANPA/DESCRIPTION
GANPA/R
GANPA/R/gexprs.R
GANPA/R/msprot.R
GANPA/R/gsets.R
GANPA/R/gsettest.R
GANPA/COPYING