weight.gsets.with.msprot: Weight genes in pathways with a gene association network...
In GANPA: Gene Association Network-Based Pathway Analysis (GANPA)
weight.gsets.with.msprot R Documentation
Weight genes in pathways with a gene association network after correction for multi-subunit proteins
Description
Given a gene functional association network and a list of multi-subunit proteins, the gene weights in a list of pathways are assigned with a procedure of correction for multi-subunit proteins.
Usage
weight.gsets.with.msprot(gsets, isets.multi, msp.groups)
Arguments
gsets
A gene association network stored in a list.
isets.multi
Pathways stored in the form of a list of gene sets.
msp.groups
A list of multi-subunit proteins.
Value
A list of named numeric vectors storing gene weights, with gene names in the vector names.
Author(s)
Zhaoyuan Fang, Weidong Tian and Hongbin Ji
References
Zhaoyuan Fang, Weidong Tian and Hongbin Ji. A Network-Based Gene Weighting Approach for Pathway Analysis. Submitted.
See Also
weight.gsets.test
GANPA documentation built on May 29, 2024, 9:21 a.m.
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| weight.gsets.with.msprot | R Documentation |
Weight genes in pathways with a gene association network after correction for multi-subunit proteins
Description
Given a gene functional association network and a list of multi-subunit proteins, the gene weights in a list of pathways are assigned with a procedure of correction for multi-subunit proteins.
Usage
weight.gsets.with.msprot(gsets, isets.multi, msp.groups)
Arguments
gsets |
A gene association network stored in a list. |
isets.multi |
Pathways stored in the form of a list of gene sets. |
msp.groups |
A list of multi-subunit proteins. |
Value
A list of named numeric vectors storing gene weights, with gene names in the vector names.
Author(s)
Zhaoyuan Fang, Weidong Tian and Hongbin Ji
References
Zhaoyuan Fang, Weidong Tian and Hongbin Ji. A Network-Based Gene Weighting Approach for Pathway Analysis. Submitted.
See Also
weight.gsets.test
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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