Weight genes in pathways with a gene association network
Given a gene functional association network, the gene weights in a list of pathways are assigned, with genes not present in the network assigned basic weights.
A gene association network stored in a list.
Pathways stored in the form of a list of gene sets.
A list of named numeric vectors storing gene weights, with gene names in the vector names.
Zhaoyuan Fang, Weidong Tian and Hongbin Ji
Zhaoyuan Fang, Weidong Tian and Hongbin Ji. A Network-Based Gene Weighting Approach for Pathway Analysis. Submitted.