weight.gsets.test: Weight genes in pathways with a gene association network
In GANPA: Gene Association Network-Based Pathway Analysis (GANPA)
Description
Usage
Arguments
Value
Author(s)
References
See Also
Description
Given a gene functional association network, the gene weights in a list of pathways are assigned, with genes not present in the network assigned basic weights.
Usage
1
weight.gsets.test(isets, gsets)
Arguments
isets
A gene association network stored in a list.
gsets
Pathways stored in the form of a list of gene sets.
Value
A list of named numeric vectors storing gene weights, with
gene names in the vector names.
Author(s)
Zhaoyuan Fang, Weidong Tian and Hongbin Ji
References
Zhaoyuan Fang, Weidong Tian and Hongbin Ji.
A Network-Based Gene Weighting Approach for Pathway Analysis.
Submitted.
See Also
GANPA documentation built on Jan. 28, 2021, 5:07 p.m.
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Description Usage Arguments Value Author(s) References See Also
Description
Given a gene functional association network, the gene weights in a list of pathways are assigned, with genes not present in the network assigned basic weights.
Usage
1 | weight.gsets.test(isets, gsets)
|
Arguments
isets |
A gene association network stored in a list. |
gsets |
Pathways stored in the form of a list of gene sets. |
Value
A list of named numeric vectors storing gene weights, with gene names in the vector names.
Author(s)
Zhaoyuan Fang, Weidong Tian and Hongbin Ji
References
Zhaoyuan Fang, Weidong Tian and Hongbin Ji. A Network-Based Gene Weighting Approach for Pathway Analysis. Submitted.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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