Weight genes in pathways with a gene association network

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Description

Given a gene functional association network, the gene weights in a list of pathways are assigned, with genes not present in the network assigned basic weights.

Usage

1
weight.gsets.test(isets, gsets)

Arguments

isets

A gene association network stored in a list.

gsets

Pathways stored in the form of a list of gene sets.

Value

A list of named numeric vectors storing gene weights, with gene names in the vector names.

Author(s)

Zhaoyuan Fang, Weidong Tian and Hongbin Ji

References

Zhaoyuan Fang, Weidong Tian and Hongbin Ji. A Network-Based Gene Weighting Approach for Pathway Analysis. Submitted.

See Also

weight.gsets.with.msprot