Nothing
gc_heatmap
. An error occurred in case of two peaks that were
identical when rounded to decimal places.fill = TRUE
as a parameter in utils::read.table
when
reading data from text within internal functions. Loading GC data
with utils::read.table failed in cases of missing values in a column
(i.e. empty). This is the correct behaviour as missing data should
always be coded explicitly by ‘NA’remove_empty
for the main function
align_chromatograms
. If samples are empty (i.e.. no peak) this
parameter allows to remove those cases from the dataset to avoid
problems in post-hoc analyses. By default FALSE
, i.e.. all but the
blank samples are kept.permute
for the functions
align_chromatograms
and align_peaks
. This allows to change the
default behaviour of random permutation of samples during the
alignment and might be useful if exact replication is needed.read_empower2
allows to import HPLC data that
has been generated using the EMPOWER 2 softwareBugfixes
New functions implemented
choose_optimal_reference
offers an automatism to pick suitable
references.draw_chromatograms
allows to represent a peak list in form of
chromatogram.remove_blanks
allows to get rid of peaks that represent
contamination after aligning a datasetremove_singletons
allows to remove single peaks from the dataset
after aligningmerge_redundant_rows
allows to merge rows that were not recognised
as redundant during the alignment by increasing the threshold value
for the evaluation of similarityAlgorithm
pbapply
, we implemented progress bars to inform the user
about the progress and the estimated running time of intermediate
steps in the alignment of peak lists.warning messages
Plots
plot.GCalign
.gc_heatmap
.draw_chromatograms
was added as another visualisation
tool.Vignettes
Documentation
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