gen.find.Min.Distance.MRCA: Finds the minimum distances between pairs of individuals...

Description Usage Arguments Value See Also Examples

View source: R/fonctionsPAR.R

Description

Returns the shortest distances (number of meioses) between pairs of probands given the matrix of MRCAs output by the gen.findMRCA function.

Usage

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gen.find.Min.Distance.MRCA(genMatrix, individuals="ALL", ancestors="ALL")

Arguments

genMatrix

Matrix of most recent common ancestors, MRCAs, obtained with gen.findMRCA. Required.

individuals

Vector of proband id numbers to include. All are included by default.

ancestors

Vector of MRCA id numbers to include. All are included by default.

Value

returns a matrix

See Also

gen.genealogy gen.founder gen.findMRCA gen.findDistance gen.findFounders

Examples

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data(geneaJi) 
genJi<-gen.genealogy(geneaJi) 
matMRCA<-gen.findMRCA(genJi, individuals=c(1,29), NbProcess = 1)
gen.find.Min.Distance.MRCA(matMRCA)


## Not run: Increasing NbProcess will decrease execution time
data(genea140) 
gen140<-gen.genealogy(genea140) 
matMRCA<-gen.findMRCA(gen140, individuals=c(409033,408728,408828), NbProcess = 1)
gen.find.Min.Distance.MRCA(matMRCA, individuals=c(409033,408728))

GENLIB documentation built on May 29, 2017, 4:44 p.m.