Nothing
## ----echo=FALSE, out.width = "60%", out.extra='style="border: 0; padding:20px"', fig.alt="GGIR logo"----
knitr::include_graphics("GGIR-MASTERLOGO-RGB.png")
## ----setup, include=FALSE-----------------------------------------------------
knitr::opts_chunk$set(echo = TRUE)
## ----eval=FALSE---------------------------------------------------------------
# install.packages("GGIR", dependencies = TRUE)
## ----eval=FALSE---------------------------------------------------------------
# install.packages("remotes")
# remotes::install_github("wadpac/GGIR")
## ----eval=FALSE---------------------------------------------------------------
# library(GGIR)
# GGIR(datadir="C:/mystudy/mydata",
# outputdir="D:/myresults")
## ----eval=FALSE---------------------------------------------------------------
# library(GGIR)
# GGIR(mode=c(1,2,3,4,5),
# datadir="C:/mystudy/mydata",
# outputdir="D:/myresults",
# do.report=c(2,4,5),
# #=====================
# # Part 2
# #=====================
# data_masking_strategy = 1,
# hrs.del.start = 0, hrs.del.end = 0,
# maxdur = 9, includedaycrit = 16,
# qwindow=c(0,24),
# mvpathreshold =c(100),
# excludefirstlast = FALSE,
# includenightcrit = 16,
# #=====================
# # Part 3 + 4
# #=====================
# def.noc.sleep = 1,
# outliers.only = TRUE,
# criterror = 4,
# do.visual = TRUE,
# #=====================
# # Part 5
# #=====================
# threshold.lig = c(30), threshold.mod = c(100), threshold.vig = c(400),
# boutcriter = 0.8, boutcriter.in = 0.9, boutcriter.lig = 0.8,
# boutcriter.mvpa = 0.8, boutdur.in = c(1,10,30), boutdur.lig = c(1,10),
# boutdur.mvpa = c(1),
# includedaycrit.part5 = 2/3,
# #=====================
# # Visual report
# #=====================
# timewindow = c("WW"),
# visualreport=TRUE)
## ----out.width = "700px",echo=FALSE, fig.alt="Example visualreport"-----------
knitr::include_graphics("reportexample.jpg")
## ----echo=FALSE, out.width = "60%", out.extra='style="border: 0; padding:20px"', fig.alt="GGIR logo"----
knitr::include_graphics("GGIR-MASTERLOGO-RGB.png")
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