plot.ggmncv: Plot 'ggmncv' Objects

In GGMncv: Gaussian Graphical Models with Nonconvex Regularization

Description

Plot the solution path for the partial correlations.

Usage

## S3 method for class 'ggmncv'
plot(x, size = 1, alpha = 0.5, ...)

Arguments

x	An object of class ggmncv.
size	Numeric. Line size in geom_line.
alpha	Numeric. The transparency of the lines.
...	Currently ignored.

Value

A ggplot object.

Examples

# data
Y <- GGMncv::ptsd[,1:10]

# correlations
S <- cor(Y, method = "spearman")

# fit model
# default: atan
fit <- ggmncv(R = S, n = nrow(Y), progress = FALSE)

# plot
plot(fit)

# lasso
fit <- ggmncv(R = S, n = nrow(Y), progress = FALSE,
              penalty = "lasso")

# plot
plot(fit)

GGMncv documentation built on Dec. 15, 2021, 9:10 a.m.