Nothing
ui <- tagList(tags$head(
tags$script("
Shiny.addCustomMessageHandler('background-color', function(color) {
document.body.style.backgroundColor = color;
});
")
),
tags$head(
tags$style(
HTML(".custom-table {
width: 80%; /* Adjust the width as needed */
height: 300px; /* Adjust the height as needed */
}")
)
),
navbarPage(
windowTitle = 'GEM-R',
title = HTML('<span style="color: white;font-size = 10px;">G<sub>p</sub>EM-R</span>'),
tags$head(
tags$link(rel = "stylesheet", type = "text/css", href = "stylefinal.css")
),
id = "navbarID",
tabPanel('Home',
tags$head(
tags$link(rel = "stylesheet", type = "text/css", href = "www/stylehome.css")
),
tags$div(
includeHTML("www/Home.html")
),
# Include the JavaScript file
tags$script(type = "text/javascript", src = "www/homeapp.js")),
tabPanel(
'Simulation Study',
id = 'Tab_1',
sidebarLayout(
sidebarPanel(
actionButton('button1',div(id='btntext','📉 Get Estimates'), style = "font-size: 20px; padding: 10px;,width : 100%",class='custom-btn'),
br(),
br(),
br(),
sliderInput(
inputId = "t_range",
label = div(id = 'label',"⏲️ Time Points:"),
min = 0,
max = 50,
value = c(1,10),
step = 1
),
helpText('Select Time Points',class = "help-text" ),
br(),
numericInput("trajectory", div(id='label',"🔢 No. of Independent Trajectories (n):"), value = 10,min = 1),
helpText('Select No. of Independent Trajectories (n)',class = "help-text"),
br(),
numericInput("window",div(id='label',"🔢 Window Size :"),value = 3,min = 0),
helpText("Select a Window size for Local Estimation",class = "help-text"),
br(),
selectInput(
"model",
div(id='label',"⚙️ Choose a Model :"),
choices = c("Logistic Model","Exponential Model", "Theta - Logistic Model", "Von-Bertallanfy Model", "Gompertz Model"),selected = "Logistic Model"),
helpText('Select a Model You Want to Use',class = "help-text"),
class = "none",
br(),
conditionalPanel(
condition = "input.model == 'Logistic Model'",
numericInput("logi_r", div(id = 'label'," r :"), value = 0.2,min = 0.001),
helpText('Select a Value of r ',class = "help-text"),
br(),
numericInput("logi_k", div(id = 'label'," K :"), value = 100,min = 0.001),
helpText('Select a K Value',class = "help-text"),
br(),
numericInput("logi_s", div(id = 'label'," Sigma (σ):"), value = 2,min = 0.001),
helpText('Select a Sigma (σ) Value',class = "help-text"),
br(),
numericInput("logi_rho", div(id = 'label'," Rho (ρ) :"), value = 0.5),
helpText('Select a Rho (ρ) Value',class = "help-text"),
br(),
numericInput("logi_in", div(id = 'label'," Initial Value (x0) :"), value = 10,min = 0.001),
helpText('Select a Theta Value',class = "help-text")),
conditionalPanel(
condition = "input.model == 'Exponential Model'",
numericInput("expo_r", div(id = 'label'," r :"), value = 0.1,min = 0.001),
helpText('Select Value of Exponential Parameter r ',class = "help-text"),
br(),
numericInput("expo_rho",div(id = 'label'," Rho (ρ) :"), value = 0.5),
helpText('Select a Rho (ρ) Value',class = "help-text"),
br(),
numericInput("expo_s",div(id = 'label'," Sigma (σ) :"), value = 2,min = 0.001),
helpText('Select a Sigma Value',class = "help-text"),
br(),
numericInput("expo_in", div(id = 'label'," Initial Point (x0) :"), value = 1,min = 0.001),
helpText('Set an Initial Point',class = "help-text")
),
conditionalPanel(
condition = "input.model == 'Theta - Logistic Model'",
numericInput("theta_r", div(id = 'label'," r :"), value = 0.2,min = 0.001),
helpText('Select Value of r ',class = "help-text"),
br(),
numericInput("theta_th",div(id = 'label'," Theta :"), value = 1.2,min = 0.001),
helpText('Select a Theta Value between (0.1 to 2) only',class = "help-text"),
br(),
numericInput("theta_k",div(id = 'label'," K :"), value = 100,min = 0.001),
helpText('Select a K Value',class = "help-text"),
br(),
numericInput("theta_rho", div(id = 'label'," Rho (ρ) :"), value = 0.5),
helpText('Select a Rho (ρ) Value ',class = "help-text"),
br(),
numericInput("theta_in",div(id = 'label'," Initial Value (x0) :"), value = 10,min = 0.001),
helpText('Select a Theta Value',class = "help-text"),
br(),
numericInput("theta_s", div(id = 'label'," Sigma (σ) :"), value = 2,min = 0.001),
helpText('Select a Sigma (σ) Value',class = "help-text")),
conditionalPanel(
condition = "input.model == 'Von-Bertallanfy Model'",
numericInput("von_r", div(id = 'label'," r :"), value = 0.3,min = 0.001),
helpText('Select Value of r ',class = "help-text"),
br(),
numericInput("von_k", div(id = 'label'," K :"), value = 100,min = 0.001),
helpText('Select a Value of K',class = "help-text"),
br(),
numericInput("von_rho", div(id = 'label'," Rho (ρ) :"), value = 0.5),
helpText('Select a Rho (ρ) Value',class = "help-text"),
br(),
numericInput("von_in", div(id = 'label'," Initial Value (x0) :"), value = 10,min = 0.001),
helpText('Select a Theta Value',class = "help-text"),
br(),
numericInput("von_s", div(id = 'label'," Sigma (σ) :"), value = 2,min = 0.001),
helpText('Select a Sigma (σ) Value',class = "help-text")
),
conditionalPanel(
condition = "input.model == 'Gompertz Model'",
numericInput("gom_b", div(id = 'label'," b :"), value = 0.3,min = 0.001),
helpText('Select a Value of b ',class = "help-text"),
br(),
numericInput("gom_c", div(id = 'label'," c :"), value = 0.2,min = 0.001),
helpText('Select a c Value',class = "help-text"),
br(),
numericInput("gom_rho", div(id = 'label'," Rho (ρ) :"), value = 0.5),
helpText('Select a Rho (ρ) Value',class = "help-text"),
br(),
numericInput("gom_in", div(id = 'label'," Initial Value (x0) :"), value = 10,min = 0.001),
helpText('Select a Theta Value',class = "help-text"),
br(),
numericInput("gom_s", div(id = 'label'," Sigma (σ) :"), value = 2,min = 0.001),
helpText('Select a Sigma (σ) Value',class = "help-text")
),
prettyRadioButtons("radio_button", div(id = 'label',"👆 Method Selected to Compute ISRP (Default) : "), choices = c("Local Maximizaton"),animation = 'pulse',selected ="Local Maximizaton" ),
helpText('A method is selected by Default',class = "help-text"),class = 'sidebar'),
mainPanel(
fluidRow(
column(12,div(id = 'title',textOutput('model_name')),class = 'name_m')
),
br(),
fluidRow(
column(9,div(id='plot',plotOutput('plot1')
),class = 'columns'),
column(1,
div(id = 'zoombtn',
actionBttn(
inputId = "zoom",
label = 'Zoom',
icon = icon("search-plus", class = "opt"),
style = "fill",
color = "success",
size = "s"
)),
div(id = 'desctext','This plot is Size Profile of Data'),
div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format",
choiceNames = c("png",'pdf',"csv (data)"),
choiceValues = c('png','pdf','csv'),
selected = 'png',
direction = "vertical"
),
downloadButton('plot_down','📈'),
size = "s",
icon = icon("download", class = "opt"),
up = TRUE
))
,class='smallCol',align = 'center')
),
br(),
fluidRow(
column(5,'Global Estimates Table',br(),
tableOutput("table1"),class = 'colu1'),
column(5,'Covariance Matrix',
conditionalPanel(
condition = "input.model == 'Theta - Logistic Model'",
paste(' '),
paste(' '),
HTML('<span style="color: white; font-size = medium;">(Zoom to check all Estimates)</span>'),
br()
),
tableOutput('covM'),div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format1_1",
choiceNames = c('csv'),
choiceValues = c('csv'),
selected = "csv",
direction = "vertical"
),
downloadButton('c_mat','📟'),
size = "s",
icon = ("Download Covariance Matrix Here"),
up = TRUE
)),class = 'colu'),
column(1,
div(id = 'zoombtn',
actionBttn(
inputId = "zoom2",
label = 'Zoom',
icon = icon("search-plus", class = "opt"),
style = "fill",
color = "success",
size = "s"
)),
div(id = 'desctext','Global Estimates of Parameters and its Covariance Matrix'),
div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format1_2",
label = "Select type",
choiceNames = c('csv'),
choiceValues = c('csv'),
selected = "csv",
direction = "vertical"
),
downloadButton('down_global','📟'),
size = "s",
icon = icon("download", class = "opt"),
up = TRUE
))
,class='smallCol',align = 'center')
),
br(),
fluidRow(
column(9,'Local Estimates Table (Head Values) (Zoom to check full Table)',tableOutput('table2'),paste(' '),paste('Click Here to get Covariance Matrix of Local Estimates 👉'),
actionButton('Cov_M','Covariance table'),class = 'columns'),
column(1,
div(id = 'zoombtn',
actionBttn(
inputId = "zoom3",
label = 'Zoom',
icon = icon("search-plus", class = "opt"),
style = "fill",
color = "success",
size = "s"
)),
div(id = 'desctext','Local Estimates of Parameters and its Covariance Matrix'),
div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format2",
label = "Select type",
choiceNames = c('csv'),
choiceValues = c('csv'),
selected = "csv",
direction = "vertical"
),
downloadButton('local_est','📟'),
size = "s",
icon = icon("download", class = "opt"),
up = TRUE
))
,class='smallCol',align = 'center')
),
br(),
fluidRow(
column(9,'Local Estimates Plot',
div(
style = "display: flex; flex-wrap: wrap;",
div(
style = "flex: 1;",
plotOutput("plot_1")
),
div(
style = "flex: 1;",
plotOutput("plot_2")
)
),class = 'columns_plot'),
column(1,
div(id = 'zoombtn',
actionBttn(
inputId = "zoom4",
label = 'Zoom',
icon = icon("search-plus", class = "opt"),
style = "fill",
color = "success",
size = "s"
)),
div(id = 'desctext_plot','Plot(s) of Local Estimates'),
div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format3",
choiceNames = c("png","pdf"),
choiceValues = c('png','pdf'),
selected = 'png',
direction = "vertical"
),
downloadButton('l_plot_d','📈'),
size = "s",
icon = icon("download", class = "opt"),
up = TRUE
))
,class='smallCol_plot',align = 'center')
),
br(),
fluidRow(
column(9,'Local Estimates Plot',
br(),
div(
style = "display: flex; flex-wrap: wrap;",
div(
style = "flex: 1;",
plotOutput("plot_3")
),
div(
style = "flex: 1;",
plotOutput("plot_4")
)
),class = 'columns_plot'),
column(1,
div(id = 'zoombtn',
actionBttn(
inputId = "zoom5",
label = 'Zoom',
icon = icon("search-plus", class = "opt"),
style = "fill",
color = "success",
size = "s"
)),
div(id = 'desctext_plot','Plot(s) of Local Estimates'),
div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format4",
choiceNames = c("png","pdf"),
choiceValues = c('png','pdf'),
selected = 'png',
direction = "vertical"
),
downloadButton('l_plot_d2','📈'),
size = "s",
icon = icon("download", class = "opt"),
up = TRUE
))
,class='smallCol_plot',align = 'center')
),
br(),
conditionalPanel(
condition = "input.model == 'Theta - Logistic Model'",
fluidRow(
column(9, 'Local Estimates Plot', br(),
div(
style = "display: flex; flex-wrap: wrap;",
div(
style = "flex: 1;",
plotOutput("plot_5")
)
),
class = 'columns_plot'
),
column(1,
div(id = 'zoombtn',
actionBttn(
inputId = "zoom6",
label = 'Zoom',
icon = icon("search-plus", class = "opt"),
style = "fill",
color = "success",
size = "s"
)
),
div(id = 'desctext_plot', 'Plot of Local Estimates'),
div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format5",
choiceNames = c("png", "pdf"),
choiceValues = c('png', 'pdf'),
selected = 'png',
direction = "vertical"
),
downloadButton('l_plot_d3', '📈'),
size = "s",
icon = icon("download", class = "opt"),
up = TRUE
)
),
class = 'smallCol_plot',
align = 'center'
)
)
)
)
)
),
tabPanel(
'Real Data',
sidebarLayout(
sidebarPanel(
actionButton('button2',div(id='btntext','📉 Get Estimates'), style = "font-size: 20px; padding: 10px;,width : 100%",class='custom-btn'),
br(),
br(),
br(),
fileInput("upload", div(id = 'label'," 📅 Upload File"), accept = c(".csv", ".txt")),
helpText('Upload Your File (csv, txt format only)',class = "help-text"),
class = "",
br(),
numericInput("window2",div(id='label',"🔢 Window Size :"),value = 3),
helpText("Select a Window size for Local Estimation",class = "help-text"),
br(),
selectInput(
"model1",
div(id='label',"⚙️ Choose a Model :"),
choices = c("Logistic Model", "Von-Bertallanfy Model", "Gompertz Model"),selected = "Logistic Model"
),
helpText('Select a Model You Want to Use',class = "help-text"),
class = "",
conditionalPanel(
condition = "input.model1 == 'Logistic Model'",
numericInput(inputId = "prob", div(id = 'label'," r :"), value = 0.7,min = 0.001),
helpText('Select a Value of r ',class = "help-text")),
conditionalPanel(
condition = "input.model1 == 'Von-Bertallanfy Model'",
numericInput("von_r1", div(id = 'label'," r :"), value = 0.8,min = 0.001),
helpText('Select Value of r ',class = "help-text")),
conditionalPanel(
condition = "input.model1 == 'Gompertz Model'",
numericInput("gom_b1", div(id = 'label'," b :"), value = 0.3,min = 0.001),
helpText('Select a Value of b ',class = "help-text"),
br(),
numericInput("gom_c1", div(id = 'label'," c :"), value = 0.2,min = 0.001),
helpText('Select a c Value',class = "help-text")),
prettyRadioButtons('tolerance',div(id = 'label',"🔢 Select a Tolerance level for P value"),choices = c('0.01','0.05','0.1'),animation = 'pulse',selected = '0.05'),
helpText('Select a Tolerance level for P value calculation',class = 'help-text'),
prettyRadioButtons("radio_button", div(id = 'label',"👆 Method Selected to Compute ISRP (Default) : "), choices = c("Local Maximizaton"),animation = 'pulse',selected ="Local Maximizaton" ),
helpText('A method is selected by Default',class = "help-text"),
br(),
prettyRadioButtons('method_p',div(id='label','👆 Select a p value calculation method'),choices = c('Parametric Bootstrap','Non-parametric Bootstrap'),animation = 'pulse',selected = 'Parametric Bootstrap'),
helpText('Select a method',class = "help-text"),
actionButton('button3',div(id='btntext_2','📉 Compare p value Plots'), style = "font-size: 20px; padding: 10px;,width : 100%",class='custom-btn'),
br(),
helpText('To Compare P value plot generated by all model',class = 'help-text'),class = 'sidebar'),
mainPanel(
fluidRow(
column(12,div(id = 'title',textOutput('model_name2')),class = 'name_m')
),
br(),
fluidRow(
column(8,div(id = 'datatable',dataTableOutput('data')), class = 'columns'
),
column(1,div(id = 'desctext','Your Uploaded Data will be displayed Here'),class='smallCol',align = "center")),
br(),
fluidRow(
column(9,
div(id = 'plot',plotOutput('data_p')),class = 'columns'),
column(1,
div(id = 'zoombtn',
actionBttn(
inputId = "zoom7",
label = 'Zoom',
icon = icon("search-plus", class = "opt"),
style = "fill",
color = "success",
size = "s"
)),
div(id = 'desctext','Size Profile of Uploaded Data'),
div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format6",
choiceNames = c("png", "pdf"),
choiceValues = c('png', 'pdf'),
selected = 'png',
direction = "vertical"
),
downloadButton('r_data_down', '📈'),
size = "s",
icon = icon("download", class = "opt"),
up = TRUE
))
,class='smallCol',align = 'center')
),
br(),
fluidRow(
column(5,'Global Estimates Table',br(),
tableOutput("table1_r"),class = 'colu1'),
column(5,'Covariance Matrix',
tableOutput('covM_r'),div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format7_1",
choiceNames = c('csv'),
choiceValues = c('csv'),
selected = "csv",
direction = "vertical"
),
downloadButton('c_mat_r','📟'),
size = "s",
icon = ("Download Covariance Matrix Here"),
up = TRUE
)),class = 'colu'),
column(1,
div(id = 'zoombtn',
actionBttn(
inputId = "zoom8",
label = 'Zoom',
icon = icon("search-plus", class = "opt"),
style = "fill",
color = "success",
size = "s"
)),
div(id = 'desctext','Global Estimates of Parameters and its Covariance Matrix'),
div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format7_2",
label = "Select type",
choiceNames = c('csv'),
choiceValues = c('csv'),
selected = "csv",
direction = "vertical"
),
downloadButton('down_global_r','📟'),
size = "s",
icon = icon("download", class = "opt"),
up = TRUE
))
,class='smallCol',align = 'center')
),
br(),
fluidRow(
column(9,div(id = 'plot',plotOutput('com_plot')),class = 'columns'),
column(1,
div(id = 'zoombtn',
actionBttn(
inputId = "zoom9",
label = 'Zoom',
icon = icon("search-plus", class = "opt"),
style = "fill",
color = "success",
size = "s"
)),
div(id = 'desctext','Visualization of Fitted Curve'),
div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format8",
choiceNames = c("png", "pdf"),
choiceValues = c('png', 'pdf'),
selected = 'png',
direction = "vertical"
),
downloadButton('com_plot_r', '📈'),
size = "s",
icon = icon("download", class = "opt"),
up = TRUE
))
,class='smallCol',align = 'center')
),
br(),
fluidRow(
column(9,'Local Estimates Table (Head Values) (Zoom to check full Table)',tableOutput('table2_r'),paste(' '),paste('Click Here to get Covariance Matrix of Local Estimates 👉'),
actionButton('Cov_M_r','Covariance table'),class = 'columns'),
column(1,
div(id = 'zoombtn',
actionBttn(
inputId = "zoom10",
label = 'Zoom',
icon = icon("search-plus", class = "opt"),
style = "fill",
color = "success",
size = "s"
)),
div(id = 'desctext','Local Estimates of Parameters and its Covariance Matrix'),
div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format9",
label = "Select type",
choiceNames = c('csv'),
choiceValues = c('csv'),
selected = "csv",
direction = "vertical"
),
downloadButton('local_est_real','📟'),
size = "s",
icon = icon("download", class = "opt"),
up = TRUE
))
,class='smallCol',align = 'center')
),
br(),
fluidRow(
column(9,'Local Estimates Plot',
div(
style = "display: flex; flex-wrap: wrap;",
div(
style = "flex: 1;",
plotOutput("plot_1_r")
),
div(
style = "flex: 1;",
plotOutput("plot_2_r")
)
),class = 'columns_plot'),
column(1,
div(id = 'zoombtn',
actionBttn(
inputId = "zoom11",
label = 'Zoom',
icon = icon("search-plus", class = "opt"),
style = "fill",
color = "success",
size = "s"
)),
div(id = 'desctext_plot','Plot(s) of Local Estimates'),
div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format10",
choiceNames = c("png","pdf"),
choiceValues = c('png','pdf'),
selected = 'png',
direction = "vertical"
),
downloadButton('l_plot_d_real','📈'),
size = "s",
icon = icon("download", class = "opt"),
up = TRUE
))
,class='smallCol_plot',align = 'center')
),
br(),
fluidRow(
column(9,div(id = 'plot',plotOutput('p_plot')),class = 'columns'),
column(1,
div(id = 'zoombtn',
actionBttn(
inputId = "zoom12",
label = 'Zoom',
icon = icon("search-plus", class = "opt"),
style = "fill",
color = "success",
size = "s"
)),
div(id = 'desctext','P-value Plot of Selected Model'),
div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format11",
choiceNames = c("png", "pdf"),
choiceValues = c('png', 'pdf'),
selected = 'png',
direction = "vertical"
),
downloadButton('p_plot_r', '📈'),
size = "s",
icon = icon("download", class = "opt"),
up = TRUE
))
,class='smallCol',align = 'center')
),
br(),
fluidRow(
column(9,div(id = 'plot',plotOutput('ap_plot')),class = 'columns'),
column(1,
div(id = 'zoombtn',
actionBttn(
inputId = "zoom13",
label = 'Zoom',
icon = icon("search-plus", class = "opt"),
style = "fill",
color = "success",
size = "s"
)),
div(id = 'desctext','Comparison Plot of P-value of all Models'),
div(id = 'downbtn',
dropdown(
radioGroupButtons(
inputId = "format12",
choiceNames = c("png", "pdf"),
choiceValues = c('png', 'pdf'),
selected = 'png',
direction = "vertical"
),
downloadButton('ap_plot_r', '📈'),
size = "s",
icon = icon("download", class = "opt"),
up = TRUE
))
,class='smallCol',align = 'center')
)
)))
))
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