GREP2: GEO RNA-Seq Experiments Processing Pipeline

An R based pipeline to download and process Gene Expression Omnibus (GEO) RNA-seq data. For a given GEO series accession ID, this pipeline generates metadata, both gene and transcript level counts, and quality control (QC) report. This package is mainly developed to process the GEO RNA-seq datasets for the web platform GREIN. More details about GREP2 and GREIN can be found here <doi:10.1101/326223>.

Package details

AuthorNaim Al Mahi [cre, aut], Mario Medvedovic [aut, ctb]
MaintainerNaim Al Mahi <>
Package repositoryView on CRAN
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GREP2 documentation built on Sept. 3, 2019, 9:05 a.m.