run_fastqc: QC report for each fastq files using FastQC
In GREP2: GEO RNA-Seq Experiments Processing Pipeline

run_fastqc HTML report of each fastq files using FastQC. You need to install FastQC from https://www.bioinformatics.babraham.ac.uk/projects/fastqc/

1	run_fastqc(destdir, fastq_dir, n_thread)

`destdir`	directory where all the results will be saved.
`fastq_dir`	directory of the fastq files.
`n_thread`	number of cores to use.

HTML report of the fastq files under fastqc directory.

fastq_dir=system.file("extdata","", package="GREP2")

run_fastqc(destdir=tempdir(),fastq_dir=fastq_dir,
n_thread=2)

GREP2 documentation built on Sept. 3, 2019, 9:05 a.m.

GREP2 index

README.md Process GEO RNA-seq data using GREP2

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

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