Description Usage Arguments Value Examples
get_fastq
downloads fastq files using SRA toolkit.
We recommend using Aspera for fast downloading. You need to
install Aspera for using ascp
option.
1 2 |
srr_id |
SRA run accession ID. |
library_layout |
layout of the library used. Either
|
use_sra_file |
logical, whether to use downloaded SRA files to get fastq files or directly download fastq files. |
sra_files_dir |
directory where SRA files are saved.
If you use |
n_thread |
number of cores to use. |
destdir |
directory where all the results will be saved. |
A single fastq file will be generated for SINGLE end reads and two files for PAIRED end reads.
1 2 3 | |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.