hg19.gene.annotation: Example Gene Annotation Data File

In GRIN2: Genomic Random Interval (GRIN)

Example Gene Annotation Data File

Description

The file has an example annotation data of 420 genes (same set of genes in the gene expression data file) directly retrieved from Ensembl BioMart database using get.ensembl.annotation function and "Human-GRCh37" as a genome assembly option (hg19).

Usage

hg19.gene.annotation

Format

hg19.gene.annotation

A data frame with 420 rows and 9 columns:

gene

Column has the gene ensembl ID

chrom

The chromosome on which the gene is located

loc.start

Gene start position in base pairs

loc.end

Gene end position in base pairs

description

Description of the gene name

gene.name

Gene symbol

biotype

Gene classes that include protein coding genes, long noncoding RNAs (lncRNAs), microRNAs (miRNAs), small nuclear RNAs (snRNA), small nucleolar RNAs (snoRNA), immunoglobulins (IGs), T-cell receptors (TCRs) and pseudogens.

chrom.strand

The chromosome strand on which the gene is located forward (1) or reverse (-1).

chrom.band

The chromosome band on which the gene is located.

Source

Data was directly retrieved from Ensembl BioMart database using get.ensembl.annotation function and "Human-GRCh37" as a genome assembly option (hg19).

GRIN2 documentation built on April 4, 2025, 1:41 a.m.