lesion.data: Example T-ALL Dataset Lesion Data

In GRIN2: Genomic Random Interval (GRIN)

Example T-ALL Dataset Lesion Data

Description

Lesion data file showing copy number variations, single nucleotide variations and structrual rearrangments affecting 265 newly diagnosed T-cell Acute Lymphoblastic Leukemia (T-ALL) patients that was reported by Liu, Yu, et al. (2017).

Usage

lesion.data

Format

lesion.data

A data frame with 6,887 rows and 5 columns:

ID

patient identifier for the patient affected by the genomic lesion

chrom

the chromosome on which the lesion is located

loc.start

the lesion start position in base pairs

loc.end

the lesion end position in base pairs

lsn.type

the lesion type for example gain, loss, mutation, fusion, etc...

Source

extracted from the supplementary material tables of the published Liu, Yu, et al. (2017) manuscript https://www.nature.com/articles/ng.3909#Sec27

GRIN2 documentation built on April 4, 2025, 1:41 a.m.