kegg.ml.gsets: KEGG gene set data for the AML and CML pathways

In GSDA: Gene Set Distance Analysis (GSDA)

Description

A data set with the list of ensemble gene identifiers for the acute myeloid leukemia (AML) and chronic myeloid leukemia pathways as defined in the KEGG pathway database

Usage

data("kegg.ml.gsets")

Format

A data frame with 128 rows describing the pairings between the following 2 variables.

vset

KEGG pathway name

vID

Ensemble gene (ENSG) identifier

Details

A dataset with assignments of ensemble gene identifiers (ENSG) to KEGG pathway names

Source

http://software.broadinstitute.org/gsea/msigdb/cards/KEGG_CHRONIC_MYELOID_LEUKEMIA

http://software.broadinstitute.org/gsea/msigdb/cards/KEGG_ACUTE_MYELOID_LEUKEMIA

Merged with information from ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz to translate gene symbols to Ensemble gene (ENSG) identifiers

Examples

data(kegg.ml.gsets)

GSDA documentation built on Jan. 18, 2021, 5:05 p.m.