R/zzz.R

In GWASinspector: Comprehensive and Easy to Use Quality Control of GWAS Results

.onAttach <-
  function(libname, pkgname) {

    welcomeString =sprintf("%s %s\n%s (%s)",
                        .QC$package.name,
                        .QC$script.version,
                      #  .QC$vignetteLink,
                        .QC$help,
                        .QC$url)

    packageStartupMessage(welcomeString)

  }


.onLoad <- function(libname, pkgname) {

}


utils::globalVariables(c('PVALUE',
      'PVALUE.calculated',
      'logP',
      'expected.logP',
      'cupper',
      'clower',
      'hID',
      'CHR',
      'POSITION',
      'VT',
      'EFFECT_ALL',
      'OTHER_ALL',
      'ALT',
      'REF',
      'found',
      'palindromic',
      'flip',
      'wrong',
      'HQ',
      'EFF_ALL_FREQ',
      'IMP_QUALITY',
      'HWE_PVAL',
      'CALLRATE',
      'EFFECT',
      'STDERR',
      'SOURCE',
      'AF',
      'PVALUE',
      'IMPUTED',
      'highDiffEAF',
      'DATE_ADDED',
      'allele',
      'precisionPlotPath',
      'skew_kurtPlotPath',
      'effsizePlotPath',
      'MULTI_ALLELIC',
      'ID',
      'EFFECT.y',
      'N',
      'Count',
      'reference.data',
      'alt.reference.data',
      'reference.data.effect',
      'report.output.path',
      'SE.mean.HQ',
      'sqrt.n',
      'ordered.names',
      'skewness',
      'kurtosis',
      'EFFECT.x',
      'lm',
      'frq',
      'expected.logP2',
      'expected.logP3',
      'expected.logP4',
      'hwp',
      'impq',
      'expected.logP5',
      'plot.title',
      'final.plot',
      'OR',
      'N_TOTAL',
      'STRAND',
      'x',
      'y0',
      'y25',
      'y50',
      'y75',
      'y100',
      'CHR.y',
      'POS',
      'MARKER',
      'build',
      'pgc',
      'sebeta',
      'lambda.estimate',
      'lambda.se',
      'SWITCHED_EFFECT_ALL',
      'SWITCHED_OTHER_ALL',
      '..density..',
      '.',
      'match_result',
      'N_CASES',
      'PVALUE.x',
      'PVALUE.y',
      'reqColumns',
      '..reqColumns'))