Description Usage Arguments Value References Examples
View source: R/OccurrenceCounts.R
This function creates a summary file counting the total number of G and H occurrences, including those with coordinates
1 | OccurrenceCounts(species, Occurrence_data)
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species |
A vector of characters with the species name. |
Occurrence_data |
A data frame object with the species name, geographical coordinates, and type of records (G or H) for a given species |
This function returns a data frame object with the following columns:
species | Species name |
totalRecords | Total number of records |
hasLat | Number of occurrences with latitude |
hasLon | Number of occurrences with longitude |
totalUseful | Number of occurrences with coordinates |
totalGRecords | Number of G occurrences |
totalGUseful | Number of G occurrences with coordinates |
totalHRecords | Number of H occurrences |
totalHUseful | Number of H occurrences with coordinates |
Ramirez-Villegas et al. (2010) PLOS ONE, 5(10), e13497. doi: 10.1371/journal.pone.0013497 Khoury et al. 2019) Ecological Indicators 98: 420-429. doi: 10.1016/j.ecolind.2018.11.016
1 2 3 4 | data(CucurbitaData)
##Obtaining species names from the data
Cucurbita_splist <- unique(CucurbitaData$species)
sp_counts <- OccurrenceCounts(Cucurbita_splist[[1]],CucurbitaData)
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