Description Usage Arguments Value References Examples
The SRSin process calculates the proportion of all occurrences of a taxon falling within the distribution model that also fall within a protected area
1 2 3 4 5 6 7 |
Species_list |
A vector of characters with the species names to calculate the GRSex metrics. |
Occurrence_data |
A data frame object with the species name, geographical coordinates, and type of records (G or H) for a given species |
Raster_list |
A list of rasters representing the species distribution models for the species list provided in Species_list. The order of rasters in this list must match the same order as Species_list. |
Pro_areas |
A raster file representing protected areas information. If Pro_areas=NULL the function will use a protected area raster file provided for your use after run GetDatasets() |
Gap_Map |
logical, if |
This function returns a data frame with two columns:
species | Species name |
SRSin | SRSin value calculated |
Khoury et al. (2019) Diversity and Distributions 26(2):209-225. doi: 10.1111/DDI.13008.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | ##Obtaining occurrences from example
data(CucurbitaData)
##Obtaining species names from the data
Cucurbita_splist <- unique(CucurbitaData$species)
##Obtaining Raster_list
data(CucurbitaRasters)
CucurbitaRasters <- raster::unstack(CucurbitaRasters)
##Obtaining protected areas raster
data(ProtectedAreas)
#Running SRSin
SRSin_df <- SRSin(Species_list = Cucurbita_splist,
Occurrence_data = CucurbitaData,
Raster_list=CucurbitaRasters,
Pro_areas=ProtectedAreas,
Gap_Map=FALSE)
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