impute2mach: converts IMPUTE to MACH files

In GenABEL: genome-wide SNP association analysis

Description

function to convert IMPUTE files to MACH format

Usage

  impute2mach(genofile, infofile, samplefile, machbasename,
    maketextdosefile = TRUE, ...)

Arguments

genofile	IMPUTE genotype file name
infofile	IMPUTE info file name
samplefile	IMPUTE sample file name
machbasename	base name for MACH-formatted outputs
maketextdosefile	whether a text dosefile is to be generated (if not, only filevector (*.fvi / *.fvd) files, usable with ProbABEL/DatABEL, will be generated). Default: TRUE
...	arguments passed to extract.annotation.impute (DO CHECK the documentation, otherwise your annotation may be skrewed up!)

Value

nothing returned except files generated on the disk

Author(s)

Yurii Aulchenko

GenABEL documentation built on May 30, 2017, 3:36 a.m.