GeneCard_ID_Convert: GENE ID CONVERT

In GeneBook: Multi-Types Gene ID Converting/Annotating

Description

Function for transferring a single gene or multiple genes to the consistent gene symbols.

Usage

GeneCard_ID_Convert(x)

Arguments

x	An R string. Gene symbol or aliases for the gene

Details

The gene conversion is based on the GeneCards Human Gene Database

Value

Value return is a matrix including Previous ID, Symbol and Label. The label tells how accuracy the conversion is

Examples

##  One Gene ID Convert
x = "AD2"
GeneCard_ID_Convert(x)

##  Multiple Gene ID Convert

test_symbol = c("ADAMTS7", "CDKN2BAS",
"SH2B3", "SLC22A3",
"LPAL2", "LPA",
"LDLR", "SMARCA4",
"PHACTR1", "ZC3HC1",
"ABO", "WDR12",
"SORT1", "TCF21",
"RASD1", "PEMT",
"RAI1", "PPAP2B")

as.matrix(test_symbol)->test_symbol

mat_id_convert = c()
for(i in 1:nrow(test_symbol)){
GeneCard_ID_Convert(test_symbol[i])->out
mat_id_convert=rbind(mat_id_convert,out)
}

cbind(test_symbol, mat_id_convert)->test_results
colnames(test_results)<-c("previous_ID","Symbol","Label")
head(test_results)

GeneBook documentation built on Aug. 1, 2019, 5:06 p.m.