Finds subsets of sets of genotypes with a high Heterozygosity, and Mean of Transformed Kinships (MTK), measures that can indicate a subset would be beneficial for rare-trait discovery and genome-wide association scanning, respectively.
|Author||Ryan C. Graebner and Alfonso Cuesta-Marcos|
|Date of publication||2016-10-25 23:03:53|
|Maintainer||Ryan C. Graebner <firstname.lastname@example.org>|
|License||GPL (>= 2)|
CoreSetOptimizer: Subset Optimization
CoreSetter: Genotype Subsetting
CoreSetterCombined: Genotype Subsetting-Alternative Method
CoreSetterPoly: Genotype Subsetting for Autopolyploids and Polymorphic...
GeneticSubsetter: Genetic Subsetter
genotypes: Sample Barley Genotypes
genotypes.poly: Sample Barley Genotypes
HET: Heterozygosity Calculator
Mat: Kinship Matrix Creator
MTK: MTK calculator
MtkCalc: MTK calculator (Depreciated)
PicCalc: PIC Calculator (Depreciated)
SubsetterMTK: Genotype Subsetting with PIC - Method One (Depreciated)
SubsetterPIC: Genotype Subsetting with PIC - Method One (Depreciated)
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