genotypes: Sample Barley Genotypes

In GeneticSubsetter: Identify Favorable Subsets of Germplasm Collections

Description

Twenty diploid barley genotypes, with twenty markers each, for to demonstrate functions in the GeneticSubsetter package.

Usage

data(genotypes)

Format

Columns are gentoypes, and rows are markers, formatted for the CoreSetter, CoreSetterCombined, CoreSetOptimizer, HET, MTK.

Source

Triticeae Coordinated Agricultural Project (T-CAP) (http://triticeaetoolbox.org)

Examples

data("genotypes")
str(genotypes)

Example output

'data.frame':	40 obs. of  20 variables:
 $ Genotype 1 : int  1 -1 -1 -1 1 -1 -1 -1 -1 1 ...
 $ Genotype 2 : int  1 1 -1 -1 1 -1 -1 -1 -1 1 ...
 $ Genotype 3 : int  1 -1 -1 -1 1 -1 1 -1 -1 1 ...
 $ Genotype 4 : int  1 -1 -1 -1 1 -1 1 -1 -1 -1 ...
 $ Genotype 5 : int  1 1 1 1 1 -1 1 -1 -1 -1 ...
 $ Genotype 6 : int  1 -1 1 -1 1 -1 1 -1 -1 1 ...
 $ Genotype 7 : int  1 1 1 -1 1 -1 1 -1 -1 1 ...
 $ Genotype 8 : int  1 1 -1 1 1 -1 1 -1 -1 -1 ...
 $ Genotype 9 : int  1 -1 -1 -1 1 -1 1 1 -1 1 ...
 $ Genotype 10: int  1 1 1 1 1 -1 1 -1 -1 -1 ...
 $ Genotype 11: int  1 1 1 1 1 -1 -1 1 -1 -1 ...
 $ Genotype 12: int  1 -1 -1 1 1 -1 1 1 -1 1 ...
 $ Genotype 13: int  1 1 1 -1 1 -1 1 -1 -1 -1 ...
 $ Genotype 14: int  1 1 1 1 1 -1 1 -1 -1 -1 ...
 $ Genotype 15: int  1 1 1 1 1 -1 1 -1 -1 -1 ...
 $ Genotype 16: int  1 1 1 1 1 -1 1 -1 -1 -1 ...
 $ Genotype 17: int  -1 -1 1 -1 1 -1 1 -1 -1 -1 ...
 $ Genotype 18: int  1 -1 1 -1 1 -1 -1 1 -1 -1 ...
 $ Genotype 19: int  1 -1 -1 -1 1 -1 1 -1 -1 -1 ...
 $ Genotype 20: int  1 1 -1 -1 1 -1 -1 -1 -1 1 ...

GeneticSubsetter documentation built on May 2, 2019, 3:56 a.m.