GeneticTools: Collection of Genetic Data Analysis Tools

A loose collection of tools for the analysis of gene expression and genotype data, currently with main focus on eQTL and MDR analysis.

AuthorDaniel Fischer
Date of publication2015-02-04 13:12:25
MaintainerDaniel Fischer <daniel.fischer@luke.fi>
LicenseGPL (>= 2)
Version0.3.1

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Files

GeneticTools
GeneticTools/inst
GeneticTools/inst/ChangeLog
GeneticTools/ToDo
GeneticTools/src
GeneticTools/src/Makevars
GeneticTools/src/mdr.h
GeneticTools/src/timeCluster.h
GeneticTools/src/mdr.cpp
GeneticTools/src/timeCluster.cpp
GeneticTools/src/Makevars.win
GeneticTools/NAMESPACE
GeneticTools/data
GeneticTools/data/annotTrack.rda
GeneticTools/data/Xgene.rda
GeneticTools/data/realSNPs.rda
GeneticTools/data/genotData.rda
GeneticTools/R
GeneticTools/R/predict.mdr.R GeneticTools/R/mdrEnsemble.R GeneticTools/R/visTrans.R GeneticTools/R/getRegionsOI.R GeneticTools/R/joinEQTLsig.R GeneticTools/R/print.eqtl.R GeneticTools/R/rearrange.R GeneticTools/R/plot.eqtl.R GeneticTools/R/QTL.R GeneticTools/R/gtfToBed.R GeneticTools/R/makeannotList.R GeneticTools/R/eqtlLM.R GeneticTools/R/mdr.R GeneticTools/R/recodeData.R GeneticTools/R/plotGeneLocation.R GeneticTools/R/calcDistances.R GeneticTools/R/getSNPlocations.R GeneticTools/R/print.mdrPredict.R GeneticTools/R/cWrappers.R GeneticTools/R/columnLabels.R GeneticTools/R/genotypePlot.R GeneticTools/R/eqtlDir.R GeneticTools/R/eqtl.R GeneticTools/R/summary.eqtl.R GeneticTools/R/joinEQTL.R GeneticTools/R/plot.mdr.R GeneticTools/R/print.mdr.R
GeneticTools/vignettes
GeneticTools/vignettes/GeneticTools.tex
GeneticTools/vignettes/GeneticTools.pdf
GeneticTools/MD5
GeneticTools/DESCRIPTION
GeneticTools/man
GeneticTools/man/mdr.Rd GeneticTools/man/getRegionsOI.Rd GeneticTools/man/Xgene.Rd GeneticTools/man/genotypePlot.Rd GeneticTools/man/eQTL.Rd GeneticTools/man/calcDistances.Rd GeneticTools/man/print.eqtl.Rd GeneticTools/man/visTrans.Rd GeneticTools/man/annotTrack.Rd GeneticTools/man/plot.mdr.Rd GeneticTools/man/GeneticTools-package.Rd GeneticTools/man/predict.mdr.Rd GeneticTools/man/recodeData.Rd GeneticTools/man/summary.eqtl.Rd GeneticTools/man/realSNPs.Rd GeneticTools/man/plot.eqtl.Rd GeneticTools/man/genotData.Rd GeneticTools/man/print.mdr.Rd GeneticTools/man/gtfToBed.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.